RNA–Protein interactions for RNA: YDL165W

CDC36, Transcript of Component of the CCR4-NOT core complex, yeast

Gene CDC36, Length 576 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC36	YDL165W	FPS1	P23900	669 aa		4.76	□□□□□ -1.65
CDC36	YDL165W	AMN1	P38285	549 aa	Predicted RBP	4.76	□□□□□ -1.65
CDC36	YDL165W	EMP47	P43555	445 aa		4.76	□□□□□ -1.65
CDC36	YDL165W	MRX12	P47084	519 aa		4.76	□□□□□ -1.65
CDC36	YDL165W	GLT1	Q12680	2145 aa	Known RBP	4.75	□□□□□ -1.65
CDC36	YDL165W	ISF1	P32488	338 aa		4.75	□□□□□ -1.65
CDC36	YDL165W	TBS1	P38114	1094 aa		4.75	□□□□□ -1.65
CDC36	YDL165W	ALA1	P40825	983 aa	Known RBP	4.75	□□□□□ -1.65
CDC36	YDL165W	SUM1	P46676	1062 aa		4.75	□□□□□ -1.65
CDC36	YDL165W	JJJ2	P46997	583 aa		4.75	□□□□□ -1.65
CDC36	YDL165W	MCA1	Q08601	432 aa		4.75	□□□□□ -1.65
CDC36	YDL165W	IRE1	P32361	1115 aa		4.74	□□□□□ -1.65
CDC36	YDL165W	SHM1	P37292	490 aa	Predicted RBP	4.74	□□□□□ -1.65
CDC36	YDL165W	HAL5	P38970	855 aa	Known RBP	4.74	□□□□□ -1.65
CDC36	YDL165W	LSB6	P42951	607 aa		4.73	□□□□□ -1.65
CDC36	YDL165W	MCM16	Q12262	181 aa		4.73	□□□□□ -1.65
CDC36	YDL165W	MET1	P36150	593 aa		4.72	□□□□□ -1.65
CDC36	YDL165W	MRPL16	P38064	232 aa		4.72	□□□□□ -1.65
CDC36	YDL165W	PDC5	P16467	563 aa	Known RBP	4.71	□□□□□ -1.66
CDC36	YDL165W	KNS1	P32350	737 aa	Predicted RBP	4.71	□□□□□ -1.66
CDC36	YDL165W	CSE4	P36012	229 aa		4.71	□□□□□ -1.66
CDC36	YDL165W	TAT1	P38085	619 aa		4.71	□□□□□ -1.66
CDC36	YDL165W	SLX8	P40072	274 aa		4.71	□□□□□ -1.66
CDC36	YDL165W	PSH1	Q12161	406 aa		4.71	□□□□□ -1.66
CDC36	YDL165W	PDC6	P26263	563 aa	Known RBP	4.7	□□□□□ -1.66
CDC36	YDL165W	SPT5	P27692	1063 aa	Known RBP	4.69	□□□□□ -1.66
CDC36	YDL165W	TY1A-DR2	Q03964	440 aa	Known RBP	4.69	□□□□□ -1.66
CDC36	YDL165W	STB3	Q12427	513 aa		4.69	□□□□□ -1.66
CDC36	YDL165W	KIN1	P13185	1064 aa		4.68	□□□□□ -1.66
CDC36	YDL165W	SPR3	P41901	512 aa		4.68	□□□□□ -1.66
CDC36	YDL165W	YDJ1	P25491	409 aa	Known RBP	4.67	□□□□□ -1.66
CDC36	YDL165W	MAC1	P35192	417 aa		4.67	□□□□□ -1.66
CDC36	YDL165W	PRY1	P47032	299 aa		4.67	□□□□□ -1.66
CDC36	YDL165W	HDA3	Q06623	655 aa		4.67	□□□□□ -1.66
CDC36	YDL165W	RPS31	P05759	152 aa	Known RBP	4.66	□□□□□ -1.66
CDC36	YDL165W	SOH1	P38633	127 aa		4.66	□□□□□ -1.66
CDC36	YDL165W	YPL034W	Q03083	165 aa		4.65	□□□□□ -1.67
CDC36	YDL165W	UTP13	Q05946	817 aa	Known RBP	4.65	□□□□□ -1.67
CDC36	YDL165W	LEU1	P07264	779 aa	Known RBP	4.63	□□□□□ -1.67
CDC36	YDL165W	YBL036C	P38197	257 aa		4.63	□□□□□ -1.67
CDC36	YDL165W	MSC7	P38694	644 aa		4.63	□□□□□ -1.67
CDC36	YDL165W	ATG3	P40344	310 aa		4.63	□□□□□ -1.67
CDC36	YDL165W	ALO1	P54783	526 aa	Known RBP	4.63	□□□□□ -1.67
CDC36	YDL165W	HPC2	Q01448	625 aa		4.63	□□□□□ -1.67
CDC36	YDL165W	YPQ2	Q06328	317 aa		4.63	□□□□□ -1.67
CDC36	YDL165W	GUA1	P38625	525 aa	Known RBP	4.62	□□□□□ -1.67
CDC36	YDL165W	ALD2	P47771	506 aa		4.61	□□□□□ -1.67
CDC36	YDL165W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
CDC36	YDL165W	SWI5	P08153	709 aa		4.6	□□□□□ -1.67
CDC36	YDL165W	TPS3	P38426	1054 aa	Known RBP	4.59	□□□□□ -1.67
CDC36	YDL165W	INP52	P50942	1183 aa		4.59	□□□□□ -1.67
CDC36	YDL165W	RGP1	P16664	663 aa		4.58	□□□□□ -1.68
CDC36	YDL165W	OMA1	P36163	345 aa		4.58	□□□□□ -1.68
CDC36	YDL165W	IRC24	P40580	263 aa		4.58	□□□□□ -1.68
CDC36	YDL165W	YPP1	P46951	817 aa		4.58	□□□□□ -1.68
CDC36	YDL165W	BUD9	P53226	547 aa		4.58	□□□□□ -1.68
CDC36	YDL165W	YNL165W	P53891	406 aa		4.58	□□□□□ -1.68
CDC36	YDL165W	TFB3	Q03290	321 aa		4.58	□□□□□ -1.68
CDC36	YDL165W	RPP1A	P05318	106 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC36	YDL165W	NHA1	Q99271	985 aa		4.57	□□□□□ -1.68
CDC36	YDL165W	BIO2	P32451	375 aa		4.56	□□□□□ -1.68
CDC36	YDL165W	PGM2	P37012	569 aa	Known RBP	4.56	□□□□□ -1.68
CDC36	YDL165W	ALG14	P38242	237 aa		4.56	□□□□□ -1.68
CDC36	YDL165W	MCM1	P11746	286 aa		4.55	□□□□□ -1.68
CDC36	YDL165W	SUP45	P12385	437 aa	Known RBP	4.55	□□□□□ -1.68
CDC36	YDL165W	AIM9	P40053	627 aa	Known RBP	4.55	□□□□□ -1.68
CDC36	YDL165W	YTA6	P40328	754 aa		4.55	□□□□□ -1.68
CDC36	YDL165W	RPS6A	P0CX37	236 aa	Known RBP	4.54	□□□□□ -1.68
CDC36	YDL165W	RPS6B	P0CX38	236 aa	Predicted RBP	4.54	□□□□□ -1.68
CDC36	YDL165W	ENO2	P00925	437 aa	Known RBP	4.53	□□□□□ -1.68
CDC36	YDL165W	PRK1	P40494	810 aa		4.53	□□□□□ -1.68
CDC36	YDL165W	HEH2	Q03281	663 aa		4.53	□□□□□ -1.68
CDC36	YDL165W	AI3	P03877	415 aa		4.52	□□□□□ -1.69
CDC36	YDL165W	RDS2	P19541	446 aa	Known RBP	4.52	□□□□□ -1.69
CDC36	YDL165W	PKC1	P24583	1151 aa		4.52	□□□□□ -1.69
CDC36	YDL165W	MLF3	P32047	452 aa		4.52	□□□□□ -1.69
CDC36	YDL165W	PGM1	P33401	570 aa	Known RBP	4.52	□□□□□ -1.69
CDC36	YDL165W	BRL1	P38770	471 aa		4.52	□□□□□ -1.69
CDC36	YDL165W	YNL108C	P53929	270 aa		4.52	□□□□□ -1.69
CDC36	YDL165W	NAR1	P23503	491 aa	Known RBP	4.51	□□□□□ -1.69
CDC36	YDL165W	GAS5	Q08193	484 aa		4.51	□□□□□ -1.69
CDC36	YDL165W	Q0182	Q9ZZW1	134 aa		4.51	□□□□□ -1.69
CDC36	YDL165W	NTH2	P35172	780 aa		4.5	□□□□□ -1.69
CDC36	YDL165W	YFL034W	P43564	1073 aa		4.5	□□□□□ -1.69
CDC36	YDL165W	RIM21	P48565	533 aa		4.5	□□□□□ -1.69
CDC36	YDL165W	GIS4	Q04233	774 aa		4.5	□□□□□ -1.69
CDC36	YDL165W	AVT1	P47082	602 aa		4.49	□□□□□ -1.69
CDC36	YDL165W	SAC7	P17121	654 aa		4.48	□□□□□ -1.69
CDC36	YDL165W	RRM3	P38766	723 aa		4.47	□□□□□ -1.69
CDC36	YDL165W	SKP1	P52286	194 aa		4.47	□□□□□ -1.69
CDC36	YDL165W	MTO1	P53070	669 aa		4.47	□□□□□ -1.69
CDC36	YDL165W	ARI1	P53111	347 aa	Known RBP	4.47	□□□□□ -1.69
CDC36	YDL165W	PDI1	P17967	522 aa	Known RBP	4.46	□□□□□ -1.7
CDC36	YDL165W	YKR073C	P36153	106 aa		4.46	□□□□□ -1.7
CDC36	YDL165W	NCL1	P38205	684 aa	Known RBP	4.46	□□□□□ -1.7
CDC36	YDL165W	TRP3	P00937	484 aa		4.44	□□□□□ -1.7
CDC36	YDL165W	SFA1	P32771	386 aa		4.44	□□□□□ -1.7
CDC36	YDL165W	YNR040W	P53736	256 aa		4.44	□□□□□ -1.7
CDC36	YDL165W	MED7	Q08278	222 aa		4.44	□□□□□ -1.7
CDC36	YDL165W	TSC13	Q99190	310 aa		4.44	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 96.7 ms