RNA–Protein interactions for RNA: YDL154W

MSH5, Transcript of Protein of the MutS family, yeast

Gene MSH5, Length 2,706 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH5	YDL154W	BDP1	P46678	594 aa		2.76	□□□□□ -1.97
MSH5	YDL154W	AIM9	P40053	627 aa	Known RBP	2.75	□□□□□ -1.97
MSH5	YDL154W	ACS2	P52910	683 aa	Known RBP	2.75	□□□□□ -1.97
MSH5	YDL154W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	2.75	□□□□□ -1.97	not detected
MSH5	YDL154W	SSF1	P38789	453 aa	Predicted RBP	2.75	□□□□□ -1.97
MSH5	YDL154W	PUF6	Q04373	656 aa	Known RBP	2.75	□□□□□ -1.97
MSH5	YDL154W	YBL113C	Q7M4S9	792 aa		2.75	□□□□□ -1.97
MSH5	YDL154W	MOD5	P07884	428 aa		2.74	□□□□□ -1.97
MSH5	YDL154W	HDA3	Q06623	655 aa		2.74	□□□□□ -1.97
MSH5	YDL154W	NOP8	Q08287	484 aa	Predicted RBP	2.74	□□□□□ -1.97
MSH5	YDL154W	FUR4	P05316	633 aa	Known RBP	2.74	□□□□□ -1.97
MSH5	YDL154W	NTH2	P35172	780 aa		2.74	□□□□□ -1.97
MSH5	YDL154W	GRS1	P38088	690 aa	Known RBP	2.74	□□□□□ -1.97
MSH5	YDL154W	STM1	P39015	273 aa	Known RBP	2.74	□□□□□ -1.97
MSH5	YDL154W	DLD3	P39976	496 aa	Known RBP	2.74	□□□□□ -1.97
MSH5	YDL154W	DFG5	Q05031	458 aa		2.74	□□□□□ -1.97
MSH5	YDL154W	CST6	P40535	587 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	THI12	P42883	340 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	THI5	P43534	340 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	THI11	P47183	340 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	PNP1	Q05788	311 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	THI13	Q07748	340 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	CYT1	P07143	309 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	RRN6	P32786	894 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	HAL5	P38970	855 aa	Known RBP	2.73	□□□□□ -1.97
MSH5	YDL154W	ROM1	P53046	1155 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	BDS1	Q08347	646 aa		2.73	□□□□□ -1.97
MSH5	YDL154W	RPS6A	P0CX37	236 aa	Known RBP	2.72	□□□□□ -1.97
MSH5	YDL154W	RPS6B	P0CX38	236 aa	Predicted RBP	2.72	□□□□□ -1.97
MSH5	YDL154W	SRS2	P12954	1174 aa		2.72	□□□□□ -1.97
MSH5	YDL154W	EMW1	P42842	904 aa	Known RBP	2.72	□□□□□ -1.97
MSH5	YDL154W	APL6	P46682	809 aa		2.72	□□□□□ -1.97
MSH5	YDL154W	SEC20	P28791	383 aa		2.72	□□□□□ -1.97
MSH5	YDL154W	MAC1	P35192	417 aa		2.72	□□□□□ -1.97
MSH5	YDL154W	FBP26	P32604	452 aa		2.71	□□□□□ -1.98
MSH5	YDL154W	GLO3	P38682	493 aa	Known RBP	2.71	□□□□□ -1.98
MSH5	YDL154W	NOP7	P53261	605 aa	Known RBP	2.71	□□□□□ -1.98
MSH5	YDL154W	FOX2	Q02207	900 aa	Known RBP	2.71	□□□□□ -1.98
MSH5	YDL154W	ISU1	Q03020	165 aa		2.71	□□□□□ -1.98
MSH5	YDL154W	AMS1	P22855	1083 aa		2.71	□□□□□ -1.98
MSH5	YDL154W	UGA3	P26370	528 aa		2.71	□□□□□ -1.98
MSH5	YDL154W	HEM3	P28789	327 aa		2.71	□□□□□ -1.98
MSH5	YDL154W	ERP5	P38819	212 aa		2.71	□□□□□ -1.98
MSH5	YDL154W	HST3	P53687	447 aa		2.71	□□□□□ -1.98
MSH5	YDL154W	DUS1	P53759	423 aa	Known RBP	2.71	□□□□□ -1.98
MSH5	YDL154W	WTM2	Q12206	467 aa		2.71	□□□□□ -1.98
MSH5	YDL154W	SWI5	P08153	709 aa		2.7	□□□□□ -1.98
MSH5	YDL154W	ALA1	P40825	983 aa	Known RBP	2.7	□□□□□ -1.98
MSH5	YDL154W	HED1	Q03937	162 aa		2.7	□□□□□ -1.98
MSH5	YDL154W	SRF1	Q12516	437 aa		2.7	□□□□□ -1.98
MSH5	YDL154W	SPT2	P06843	333 aa	Predicted RBP	2.7	□□□□□ -1.98
MSH5	YDL154W	ALD4	P46367	519 aa	Known RBP	2.7	□□□□□ -1.98
MSH5	YDL154W	GCR2	Q01722	534 aa		2.7	□□□□□ -1.98
MSH5	YDL154W	CWC15	Q03772	175 aa	Known RBP	2.7	□□□□□ -1.98
MSH5	YDL154W	UTP7	P40055	554 aa	Known RBP	2.7	□□□□□ -1.98
MSH5	YDL154W	DOP1	Q03921	1698 aa		2.69	□□□□□ -1.98
MSH5	YDL154W	SDH2	P21801	266 aa		2.69	□□□□□ -1.98
MSH5	YDL154W	ASF1	P32447	279 aa		2.69	□□□□□ -1.98
MSH5	YDL154W	SNU71	P53207	620 aa	Known RBP	2.69	□□□□□ -1.98
MSH5	YDL154W	TPS3	P38426	1054 aa	Known RBP	2.69	□□□□□ -1.98
MSH5	YDL154W	YHL050C	P38721	697 aa		2.69	□□□□□ -1.98
MSH5	YDL154W	YHR219W	P38900	624 aa		2.69	□□□□□ -1.98
MSH5	YDL154W	ARG82	P07250	355 aa		2.68	□□□□□ -1.98
MSH5	YDL154W	ISC10	P32645	267 aa		2.68	□□□□□ -1.98
MSH5	YDL154W	MRT4	P33201	236 aa	Known RBP	2.68	□□□□□ -1.98
MSH5	YDL154W	YBL086C	P38177	466 aa		2.68	□□□□□ -1.98
MSH5	YDL154W	YTA6	P40328	754 aa		2.68	□□□□□ -1.98
MSH5	YDL154W	QDR1	P40475	563 aa		2.68	□□□□□ -1.98
MSH5	YDL154W	ATG1	P53104	897 aa		2.68	□□□□□ -1.98
MSH5	YDL154W	TRK1	P12685	1235 aa		2.68	□□□□□ -1.98
MSH5	YDL154W	BOL3	P39724	118 aa		2.68	□□□□□ -1.98
MSH5	YDL154W	CDC4	P07834	779 aa		2.67	□□□□□ -1.98
MSH5	YDL154W	STE6	P12866	1290 aa		2.67	□□□□□ -1.98
MSH5	YDL154W	UBP1	P25037	809 aa		2.67	□□□□□ -1.98
MSH5	YDL154W	IPL1	P38991	367 aa		2.67	□□□□□ -1.98
MSH5	YDL154W	RGA1	P39083	1007 aa		2.67	□□□□□ -1.98
MSH5	YDL154W	SPR3	P41901	512 aa		2.67	□□□□□ -1.98
MSH5	YDL154W	NGR1	P32831	672 aa	Known RBP	2.67	□□□□□ -1.98
MSH5	YDL154W	ASH1	P34233	588 aa		2.67	□□□□□ -1.98
MSH5	YDL154W	RTT106	P40161	455 aa		2.67	□□□□□ -1.98
MSH5	YDL154W	SUT1	P53032	299 aa	Known RBP	2.67	□□□□□ -1.98
MSH5	YDL154W	MSC6	Q08818	692 aa	Known RBP	2.67	□□□□□ -1.98
MSH5	YDL154W	ATG2	P53855	1592 aa		2.66	□□□□□ -1.98
MSH5	YDL154W	RAS1	P01119	309 aa		2.66	□□□□□ -1.98
MSH5	YDL154W	GAR1	P28007	205 aa	Known RBP	2.66	□□□□□ -1.98
MSH5	YDL154W	AHP1	P38013	176 aa	Known RBP	2.66	□□□□□ -1.98
MSH5	YDL154W	SEN54	Q02825	467 aa	Predicted RBP	2.66	□□□□□ -1.98
MSH5	YDL154W	HAP1	P0CE41	1502 aa		2.66	□□□□□ -1.98
MSH5	YDL154W	MGE1	P38523	228 aa		2.66	□□□□□ -1.98
MSH5	YDL154W	MET10	P39692	1035 aa		2.66	□□□□□ -1.98
MSH5	YDL154W	POL32	P47110	350 aa		2.66	□□□□□ -1.98
MSH5	YDL154W	ACF4	P47129	309 aa		2.66	□□□□□ -1.98
MSH5	YDL154W	CLA4	P48562	842 aa		2.66	□□□□□ -1.98
MSH5	YDL154W	MET32	Q12041	191 aa		2.66	□□□□□ -1.98
MSH5	YDL154W	SPT6	P23615	1451 aa	Known RBP	2.66	□□□□□ -1.98
MSH5	YDL154W	MDJ2	P42834	146 aa		2.65	□□□□□ -1.98
MSH5	YDL154W	SUM1	P46676	1062 aa		2.65	□□□□□ -1.98
MSH5	YDL154W	NUM1	Q00402	2748 aa		2.65	□□□□□ -1.99
MSH5	YDL154W	SCD5	P34758	872 aa		2.65	□□□□□ -1.99
MSH5	YDL154W	YBR197C	P38306	217 aa		2.65	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms