RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	DAT1	P13483	248 aa	Known RBP	9.79	□□□□□ -0.84
VAR1	Q0140	OMA1	P36163	345 aa		9.79	□□□□□ -0.84
VAR1	Q0140	INP52	P50942	1183 aa		9.79	□□□□□ -0.84
VAR1	Q0140	FRA1	Q07825	749 aa		9.79	□□□□□ -0.84
VAR1	Q0140	UTP7	P40055	554 aa	Known RBP	9.78	□□□□□ -0.84
VAR1	Q0140	CSN12	P47130	423 aa		9.78	□□□□□ -0.84
VAR1	Q0140	STE20	Q03497	939 aa	Known RBP	9.77	□□□□□ -0.85
VAR1	Q0140	MRPL16	P38064	232 aa		9.76	□□□□□ -0.85
VAR1	Q0140	SPT2	P06843	333 aa	Predicted RBP	9.75	□□□□□ -0.85
VAR1	Q0140	UTR2	P32623	467 aa		9.75	□□□□□ -0.85
VAR1	Q0140	JJJ2	P46997	583 aa		9.75	□□□□□ -0.85
VAR1	Q0140	MAK16	P10962	306 aa	Predicted RBP	9.73	□□□□□ -0.85
VAR1	Q0140	IRE1	P32361	1115 aa		9.73	□□□□□ -0.85
VAR1	Q0140	ALA1	P40825	983 aa	Known RBP	9.73	□□□□□ -0.85
VAR1	Q0140	ISR1	Q06098	443 aa	Known RBP	9.73	□□□□□ -0.85
VAR1	Q0140	SHM1	P37292	490 aa	Predicted RBP	9.72	□□□□□ -0.85
VAR1	Q0140	YNR021W	P53723	404 aa	Known RBP	9.72	□□□□□ -0.85
VAR1	Q0140	TY1A-DR2	Q03964	440 aa	Known RBP	9.7	□□□□□ -0.86
VAR1	Q0140	STB3	Q12427	513 aa		9.7	□□□□□ -0.86
VAR1	Q0140	SUM1	P46676	1062 aa		9.68	□□□□□ -0.86
VAR1	Q0140	PSH1	Q12161	406 aa		9.68	□□□□□ -0.86
VAR1	Q0140	TBS1	P38114	1094 aa		9.66	□□□□□ -0.86
VAR1	Q0140	PDC6	P26263	563 aa	Known RBP	9.65	□□□□□ -0.86
VAR1	Q0140	SPR3	P41901	512 aa		9.65	□□□□□ -0.86
VAR1	Q0140	AVT1	P47082	602 aa		9.64	□□□□□ -0.87
VAR1	Q0140	TPS3	P38426	1054 aa	Known RBP	9.6	□□□□□ -0.87
VAR1	Q0140	APL6	P46682	809 aa		9.6	□□□□□ -0.87
VAR1	Q0140	HAL5	P38970	855 aa	Known RBP	9.58	□□□□□ -0.88
VAR1	Q0140	BUD9	P53226	547 aa		9.56	□□□□□ -0.88
VAR1	Q0140	MSC7	P38694	644 aa		9.55	□□□□□ -0.88
VAR1	Q0140	ISF1	P32488	338 aa		9.54	□□□□□ -0.88
VAR1	Q0140	SLX8	P40072	274 aa		9.54	□□□□□ -0.88
VAR1	Q0140	EMP47	P43555	445 aa		9.54	□□□□□ -0.88
VAR1	Q0140	AIM7	Q12156	149 aa		9.53	□□□□□ -0.88
VAR1	Q0140	MRX12	P47084	519 aa		9.52	□□□□□ -0.89
VAR1	Q0140	RPS31	P05759	152 aa	Known RBP	9.51	□□□□□ -0.89
VAR1	Q0140	NHA1	Q99271	985 aa		9.49	□□□□□ -0.89
VAR1	Q0140	PGM1	P33401	570 aa	Known RBP	9.46	□□□□□ -0.9
VAR1	Q0140	PGM2	P37012	569 aa	Known RBP	9.46	□□□□□ -0.9
VAR1	Q0140	ALG14	P38242	237 aa		9.44	□□□□□ -0.9
VAR1	Q0140	LEU1	P07264	779 aa	Known RBP	9.43	□□□□□ -0.9
VAR1	Q0140	MCM16	Q12262	181 aa		9.43	□□□□□ -0.9
VAR1	Q0140	AI3	P03877	415 aa		9.41	□□□□□ -0.9
VAR1	Q0140	ALD2	P47771	506 aa		9.41	□□□□□ -0.9
VAR1	Q0140	HDA3	Q06623	655 aa		9.41	□□□□□ -0.9
VAR1	Q0140	GAS5	Q08193	484 aa		9.39	□□□□□ -0.91
VAR1	Q0140	YKR073C	P36153	106 aa		9.38	□□□□□ -0.91
VAR1	Q0140	YPQ2	Q06328	317 aa		9.37	□□□□□ -0.91
VAR1	Q0140	AOS1	Q06624	347 aa		9.37	□□□□□ -0.91
VAR1	Q0140	TRP3	P00937	484 aa		9.36	□□□□□ -0.91
VAR1	Q0140	RPP1A	P05318	106 aa	Predicted RBP	9.36	□□□□□ -0.91
VAR1	Q0140	RGP1	P16664	663 aa		9.36	□□□□□ -0.91
VAR1	Q0140	HPC2	Q01448	625 aa		9.35	□□□□□ -0.91
VAR1	Q0140	SSA2	P10592	639 aa	Known RBP	9.34	□□□□□ -0.91
VAR1	Q0140	SOH1	P38633	127 aa		9.34	□□□□□ -0.91
VAR1	Q0140	MED7	Q08278	222 aa		9.34	□□□□□ -0.91
VAR1	Q0140	SAC7	P17121	654 aa		9.33	□□□□□ -0.92
VAR1	Q0140	NAR1	P23503	491 aa	Known RBP	9.32	□□□□□ -0.92
VAR1	Q0140	LIP5	P32875	414 aa		9.31	□□□□□ -0.92
VAR1	Q0140	ARI1	P53111	347 aa	Known RBP	9.3	□□□□□ -0.92
VAR1	Q0140	YNL165W	P53891	406 aa		9.3	□□□□□ -0.92
VAR1	Q0140	PRK1	P40494	810 aa		9.29	□□□□□ -0.92
VAR1	Q0140	ELM1	P32801	640 aa		9.28	□□□□□ -0.92
VAR1	Q0140	GIS4	Q04233	774 aa		9.28	□□□□□ -0.92
VAR1	Q0140	COQ2	P32378	372 aa		9.26	□□□□□ -0.93
VAR1	Q0140	KAE1	P36132	386 aa		9.26	□□□□□ -0.93
VAR1	Q0140	RRM3	P38766	723 aa		9.26	□□□□□ -0.93
VAR1	Q0140	DMA1	P38823	416 aa		9.26	□□□□□ -0.93
VAR1	Q0140	CTH1	P47976	325 aa		9.26	□□□□□ -0.93
VAR1	Q0140	UTP13	Q05946	817 aa	Known RBP	9.26	□□□□□ -0.93
VAR1	Q0140	CSE4	P36012	229 aa		9.25	□□□□□ -0.93
VAR1	Q0140	TOS1	P38288	455 aa		9.25	□□□□□ -0.93
VAR1	Q0140	SWI5	P08153	709 aa		9.24	□□□□□ -0.93
VAR1	Q0140	YDJ1	P25491	409 aa	Known RBP	9.24	□□□□□ -0.93
VAR1	Q0140	HEH2	Q03281	663 aa		9.24	□□□□□ -0.93
VAR1	Q0140	YLR122C	Q12312	125 aa		9.24	□□□□□ -0.93
VAR1	Q0140	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	9.23	□□□□□ -0.93	not detected
VAR1	Q0140	SPT5	P27692	1063 aa	Known RBP	9.22	□□□□□ -0.93
VAR1	Q0140	YTA6	P40328	754 aa		9.22	□□□□□ -0.93
VAR1	Q0140	TFB3	Q03290	321 aa		9.22	□□□□□ -0.93
VAR1	Q0140	PUB1	P32588	453 aa	Known RBP RIP-Chip data	9.2	□□□□□ -0.94	not detected
VAR1	Q0140	SFA1	P32771	386 aa		9.19	□□□□□ -0.94
VAR1	Q0140	ATG3	P40344	310 aa		9.19	□□□□□ -0.94
VAR1	Q0140	MLF3	P32047	452 aa		9.18	□□□□□ -0.94
VAR1	Q0140	NAB2	P32505	525 aa	Known RBP RIP-Chip data	9.16	□□□□□ -0.94	not detected
VAR1	Q0140	BRE4	Q07660	1125 aa		9.16	□□□□□ -0.94
VAR1	Q0140	MCM1	P11746	286 aa		9.12	□□□□□ -0.95
VAR1	Q0140	UBP5	P39944	805 aa		9.12	□□□□□ -0.95
VAR1	Q0140	AIM9	P40053	627 aa	Known RBP	9.11	□□□□□ -0.95
VAR1	Q0140	YGR130C	P53278	816 aa		9.1	□□□□□ -0.95
VAR1	Q0140	Q0182	Q9ZZW1	134 aa		9.1	□□□□□ -0.95
VAR1	Q0140	NGR1	P32831	672 aa	Known RBP	9.09	□□□□□ -0.95
VAR1	Q0140	RPS6A	P0CX37	236 aa	Known RBP	9.08	□□□□□ -0.96
VAR1	Q0140	RPS6B	P0CX38	236 aa	Predicted RBP	9.08	□□□□□ -0.96
VAR1	Q0140	NCL1	P38205	684 aa	Known RBP	9.08	□□□□□ -0.96
VAR1	Q0140	RNQ1	P25367	405 aa		9.06	□□□□□ -0.96
VAR1	Q0140	MAG2	Q06436	670 aa	Known RBP	9.06	□□□□□ -0.96
VAR1	Q0140	YBL036C	P38197	257 aa		9.05	□□□□□ -0.96
VAR1	Q0140	SAF1	P38352	637 aa		9.05	□□□□□ -0.96
VAR1	Q0140	MTO1	P53070	669 aa		9.05	□□□□□ -0.96

Retrieved 100 of 5,963 RNA–protein pairs in 99.1 ms