RNA–Protein interactions for RNA: ENST00000481048.5

LRCH3-216, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 3

Gene LRCH3, Length 536 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-216ENST00000481048 TSKSQ9UJT2 592 aa11.59□□□□□ -0.55
LRCH3-216ENST00000481048 CUX1P39880 1505 aa11.59□□□□□ -0.55
LRCH3-216ENST00000481048 ITGBL1O95965 494 aaPredicted RBP11.58□□□□□ -0.56
LRCH3-216ENST00000481048 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.58□□□□□ -0.56
LRCH3-216ENST00000481048 MAGI1Q96QZ7 1491 aaPredicted RBP11.57□□□□□ -0.56
LRCH3-216ENST00000481048 CHMP7Q8WUX9 453 aaPredicted RBP11.57□□□□□ -0.56
LRCH3-216ENST00000481048 LRCH3Q96II8 777 aa11.57□□□□□ -0.56
LRCH3-216ENST00000481048 ARIH1Q9Y4X5 557 aaPredicted RBP11.57□□□□□ -0.56
LRCH3-216ENST00000481048 GRIN2BQ13224 1484 aa11.57□□□□□ -0.56
LRCH3-216ENST00000481048 PRIM1P49642 420 aaKnown RBP11.55□□□□□ -0.56
LRCH3-216ENST00000481048 CDCA7LQ96GN5 454 aa11.55□□□□□ -0.56
LRCH3-216ENST00000481048 TSR3Q9UJK0 312 aaKnown RBP11.55□□□□□ -0.56
LRCH3-216ENST00000481048 HPS5Q9UPZ3 1129 aa11.55□□□□□ -0.56
LRCH3-216ENST00000481048 SNAPC4Q5SXM2 1469 aa11.55□□□□□ -0.56
LRCH3-216ENST00000481048 SYNJ1O43426 1573 aa11.54□□□□□ -0.56
LRCH3-216ENST00000481048 SUPT5HO00267 1087 aaKnown RBP11.53□□□□□ -0.56
LRCH3-216ENST00000481048 PRSS12P56730 875 aa11.53□□□□□ -0.56
LRCH3-216ENST00000481048 SYNJ2O15056 1496 aa11.52□□□□□ -0.56
LRCH3-216ENST00000481048 ARAP1Q96P48 1450 aa11.52□□□□□ -0.56
LRCH3-216ENST00000481048 ABCA10Q8WWZ4 1543 aa11.52□□□□□ -0.57
LRCH3-216ENST00000481048 CERKQ8TCT0 537 aa11.52□□□□□ -0.57
LRCH3-216ENST00000481048 GAPVD1Q14C86 1478 aa11.51□□□□□ -0.57
LRCH3-216ENST00000481048 CLASP1Q7Z460 1538 aa11.51□□□□□ -0.57
LRCH3-216ENST00000481048 SMAPO00193 183 aa11.51□□□□□ -0.57
LRCH3-216ENST00000481048 KCNC4Q03721 635 aa11.51□□□□□ -0.57
LRCH3-216ENST00000481048 PBRM1Q86U86 1689 aa11.51□□□□□ -0.57
LRCH3-216ENST00000481048 IRX2Q9BZI1 471 aaPredicted RBP11.5□□□□□ -0.57
LRCH3-216ENST00000481048 FAM198AQ9UFP1 575 aa11.5□□□□□ -0.57
LRCH3-216ENST00000481048 OSBPP22059 807 aa11.49□□□□□ -0.57
LRCH3-216ENST00000481048 PPP4CP60510 307 aa11.48□□□□□ -0.57
LRCH3-216ENST00000481048 WRNQ14191 1432 aaPredicted RBP eCLIP11.48□□□□□ -0.57
LRCH3-216ENST00000481048 ABCA5Q8WWZ7 1642 aa11.47□□□□□ -0.57
LRCH3-216ENST00000481048 SAMD7Q7Z3H4 446 aa11.47□□□□□ -0.57
LRCH3-216ENST00000481048 TATDN2Q93075 761 aa11.47□□□□□ -0.57
LRCH3-216ENST00000481048 CDHR5Q9HBB8 845 aa11.47□□□□□ -0.57
LRCH3-216ENST00000481048 C3orf80F5H4A9 247 aa11.46□□□□□ -0.57
LRCH3-216ENST00000481048 PNMA3Q9UL41 463 aa11.46□□□□□ -0.57
LRCH3-216ENST00000481048 NBPF26B4DH59 902 aa11.45□□□□□ -0.58
LRCH3-216ENST00000481048 TOP2BQ02880 1626 aa11.45□□□□□ -0.58
LRCH3-216ENST00000481048 BIVM-ERCC5R4GMW8 1640 aa11.45□□□□□ -0.58
LRCH3-216ENST00000481048 NUDT18Q6ZVK8 323 aa11.42□□□□□ -0.58
LRCH3-216ENST00000481048 GRIN2AQ12879 1464 aa11.4□□□□□ -0.58
LRCH3-216ENST00000481048 RBM27Q9P2N5 1060 aaKnown RBP11.4□□□□□ -0.58
LRCH3-216ENST00000481048 HDGFP51858 240 aaKnown RBP11.39□□□□□ -0.59
LRCH3-216ENST00000481048 ERICH3Q5RHP9 1530 aa11.39□□□□□ -0.59
LRCH3-216ENST00000481048 FHAD1B1AJZ9 1412 aa11.38□□□□□ -0.59
LRCH3-216ENST00000481048 RNF40O75150 1001 aa11.38□□□□□ -0.59
LRCH3-216ENST00000481048 TSHZ2Q9NRE2 1034 aa11.38□□□□□ -0.59
LRCH3-216ENST00000481048 NUP160Q12769 1436 aa11.37□□□□□ -0.59
LRCH3-216ENST00000481048 TJAP1Q5JTD0 557 aa11.37□□□□□ -0.59
LRCH3-216ENST00000481048 NPDC1Q9NQX5 325 aaPredicted RBP11.37□□□□□ -0.59
LRCH3-216ENST00000481048 ADAMTS12P58397 1594 aa11.37□□□□□ -0.59
LRCH3-216ENST00000481048 PADI6Q6TGC4 694 aa11.36□□□□□ -0.59
LRCH3-216ENST00000481048 TTC13Q8NBP0 860 aa11.35□□□□□ -0.59
LRCH3-216ENST00000481048 ARHGEF1Q92888 912 aaKnown RBP11.34□□□□□ -0.59
LRCH3-216ENST00000481048 MTRQ99707 1265 aa11.34□□□□□ -0.59
LRCH3-216ENST00000481048 CEP170Q5SW79 1584 aa11.33□□□□□ -0.6
LRCH3-216ENST00000481048 SHROOM2Q13796 1616 aa11.33□□□□□ -0.6
LRCH3-216ENST00000481048 MLLT3P42568 568 aaPredicted RBP11.32□□□□□ -0.6
LRCH3-216ENST00000481048 IL21Q9HBE4 155 aa11.32□□□□□ -0.6
LRCH3-216ENST00000481048 KCNV2Q8TDN2 545 aa11.31□□□□□ -0.6
LRCH3-216ENST00000481048 APLP1P51693 650 aa11.3□□□□□ -0.6
LRCH3-216ENST00000481048 SWT1Q5T5J6 900 aaKnown RBP11.3□□□□□ -0.6
LRCH3-216ENST00000481048 ERCC6L2Q5T890 1561 aa11.28□□□□□ -0.6
LRCH3-216ENST00000481048 ZNF516Q92618 1163 aa11.28□□□□□ -0.6
LRCH3-216ENST00000481048 Q6ZNB5 142 aa11.27□□□□□ -0.61
LRCH3-216ENST00000481048 SLF2Q8IX21 1173 aa11.27□□□□□ -0.61
LRCH3-216ENST00000481048 NECTIN2Q92692 538 aa11.27□□□□□ -0.61
LRCH3-216ENST00000481048 EYA1Q99502 592 aa11.27□□□□□ -0.61
LRCH3-216ENST00000481048 PPP1R18Q6NYC8 613 aa11.26□□□□□ -0.61
LRCH3-216ENST00000481048 PRG4Q92954 1404 aaPredicted RBP11.26□□□□□ -0.61
LRCH3-216ENST00000481048 SLC4A3P48751 1232 aa11.25□□□□□ -0.61
LRCH3-216ENST00000481048 COPS2P61201 443 aa11.23□□□□□ -0.61
LRCH3-216ENST00000481048 PTGDRQ13258 359 aa11.23□□□□□ -0.61
LRCH3-216ENST00000481048 PRKD2Q9BZL6 878 aa11.23□□□□□ -0.61
LRCH3-216ENST00000481048 IGF1RP08069 1367 aa11.23□□□□□ -0.61
LRCH3-216ENST00000481048 KIF27Q86VH2 1401 aa11.23□□□□□ -0.61
LRCH3-216ENST00000481048 NKX2-3Q8TAU0 364 aa11.22□□□□□ -0.61
LRCH3-216ENST00000481048 CUL7Q14999 1698 aa11.21□□□□□ -0.61
LRCH3-216ENST00000481048 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.21□□□□□ -0.61
LRCH3-216ENST00000481048 RUSC2Q8N2Y8 1516 aa11.2□□□□□ -0.62
LRCH3-216ENST00000481048 KIAA0586Q9BVV6 1533 aa11.2□□□□□ -0.62
LRCH3-216ENST00000481048 NUTM2FA1L443 756 aa11.2□□□□□ -0.62
LRCH3-216ENST00000481048 GFRA3O60609 400 aa11.2□□□□□ -0.62
LRCH3-216ENST00000481048 LAPTM4AQ15012 233 aa11.2□□□□□ -0.62
LRCH3-216ENST00000481048 KIF13AQ9H1H9 1805 aa11.19□□□□□ -0.62
LRCH3-216ENST00000481048 RBM46Q8TBY0 533 aaKnown RBP11.18□□□□□ -0.62
LRCH3-216ENST00000481048 DNAJB2P25686 324 aa11.17□□□□□ -0.62
LRCH3-216ENST00000481048 P3H3Q8IVL6 736 aa11.17□□□□□ -0.62
LRCH3-216ENST00000481048 PRR14Q9BWN1 585 aa11.16□□□□□ -0.62
LRCH3-216ENST00000481048 ADGRG1Q9Y653 693 aa11.16□□□□□ -0.62
LRCH3-216ENST00000481048 V9GY48 417 aaPredicted RBP11.16□□□□□ -0.62
LRCH3-216ENST00000481048 CARMIL1Q5VZK9 1371 aa11.16□□□□□ -0.62
LRCH3-216ENST00000481048 GGCXP38435 758 aa11.15□□□□□ -0.62
LRCH3-216ENST00000481048 FAM161AQ3B820 660 aa11.15□□□□□ -0.62
LRCH3-216ENST00000481048 PCDHB3Q9Y5E6 796 aa11.15□□□□□ -0.62
LRCH3-216ENST00000481048 MAPKBP1O60336 1514 aa11.14□□□□□ -0.63
LRCH3-216ENST00000481048 SEMA3EO15041 775 aa11.14□□□□□ -0.63
LRCH3-216ENST00000481048 ZPR1O75312 459 aa11.14□□□□□ -0.63
LRCH3-216ENST00000481048 TMEM134Q9H6X4 195 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms