RNA–Protein interactions for RNA: ENST00000472625.1

XRN1-209, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-209ENST00000472625 ABCC8Q09428 1581 aa6.48□□□□□ -1.37
XRN1-209ENST00000472625 FECHP22830 423 aa6.48□□□□□ -1.37
XRN1-209ENST00000472625 PADI6Q6TGC4 694 aa6.48□□□□□ -1.37
XRN1-209ENST00000472625 PACS2Q86VP3 889 aa6.48□□□□□ -1.37
XRN1-209ENST00000472625 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.48□□□□□ -1.37
XRN1-209ENST00000472625 HPS5Q9UPZ3 1129 aa6.48□□□□□ -1.37
XRN1-209ENST00000472625 IFT140Q96RY7 1462 aa6.47□□□□□ -1.37
XRN1-209ENST00000472625 SAMD7Q7Z3H4 446 aa6.47□□□□□ -1.37
XRN1-209ENST00000472625 LRCH3Q96II8 777 aa6.47□□□□□ -1.37
XRN1-209ENST00000472625 URB2Q14146 1524 aaKnown RBP6.46□□□□□ -1.37
XRN1-209ENST00000472625 RNF40O75150 1001 aa6.46□□□□□ -1.38
XRN1-209ENST00000472625 NUDT18Q6ZVK8 323 aa6.46□□□□□ -1.38
XRN1-209ENST00000472625 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.46□□□□□ -1.38
XRN1-209ENST00000472625 TATDN2Q93075 761 aa6.46□□□□□ -1.38
XRN1-209ENST00000472625 RBM27Q9P2N5 1060 aaKnown RBP6.46□□□□□ -1.38
XRN1-209ENST00000472625 PRDM2Q13029 1718 aa6.45□□□□□ -1.38
XRN1-209ENST00000472625 NBPF26B4DH59 902 aa6.45□□□□□ -1.38
XRN1-209ENST00000472625 CERKQ8TCT0 537 aa6.44□□□□□ -1.38
XRN1-209ENST00000472625 TSR3Q9UJK0 312 aaKnown RBP6.44□□□□□ -1.38
XRN1-209ENST00000472625 A0A0G2JS52 829 aa6.42□□□□□ -1.38
XRN1-209ENST00000472625 FAM161AQ3B820 660 aa6.42□□□□□ -1.38
XRN1-209ENST00000472625 EYA1Q99502 592 aa6.42□□□□□ -1.38
XRN1-209ENST00000472625 TOPBP1Q92547 1522 aa6.41□□□□□ -1.38
XRN1-209ENST00000472625 DNMBPQ6XZF7 1577 aa6.41□□□□□ -1.38
XRN1-209ENST00000472625 NUTM2FA1L443 756 aa6.41□□□□□ -1.38
XRN1-209ENST00000472625 ITGBL1O95965 494 aaPredicted RBP6.41□□□□□ -1.38
XRN1-209ENST00000472625 PPP4CP60510 307 aa6.41□□□□□ -1.38
XRN1-209ENST00000472625 ADGRG1Q9Y653 693 aa6.41□□□□□ -1.38
XRN1-209ENST00000472625 CCDC88BA6NC98 1476 aa6.41□□□□□ -1.38
XRN1-209ENST00000472625 WDR97A6NE52 1622 aa6.4□□□□□ -1.38
XRN1-209ENST00000472625 SWT1Q5T5J6 900 aaKnown RBP6.4□□□□□ -1.38
XRN1-209ENST00000472625 FCHSD2O94868 740 aa6.39□□□□□ -1.39
XRN1-209ENST00000472625 LMOD2Q6P5Q4 547 aa6.39□□□□□ -1.39
XRN1-209ENST00000472625 PHOX2BQ99453 314 aa6.39□□□□□ -1.39
XRN1-209ENST00000472625 EIF4G3O43432 1585 aaKnown RBP6.39□□□□□ -1.39
XRN1-209ENST00000472625 APLP1P51693 650 aa6.38□□□□□ -1.39
XRN1-209ENST00000472625 HIC1Q14526 733 aa6.38□□□□□ -1.39
XRN1-209ENST00000472625 IFFO2Q5TF58 517 aa6.38□□□□□ -1.39
XRN1-209ENST00000472625 SMYD5Q6GMV2 418 aa6.38□□□□□ -1.39
XRN1-209ENST00000472625 ARHGEF11O15085 1522 aa6.38□□□□□ -1.39
XRN1-209ENST00000472625 RIMBP3CA6NJZ7 1639 aa6.37□□□□□ -1.39
XRN1-209ENST00000472625 RIMBP3BA6NNM3 1639 aa6.37□□□□□ -1.39
XRN1-209ENST00000472625 RIMBP3Q9UFD9 1639 aa6.37□□□□□ -1.39
XRN1-209ENST00000472625 ZNF608Q9ULD9 1512 aaPredicted RBP6.37□□□□□ -1.39
XRN1-209ENST00000472625 GNPATO15228 680 aa6.37□□□□□ -1.39
XRN1-209ENST00000472625 KCNC4Q03721 635 aa6.37□□□□□ -1.39
XRN1-209ENST00000472625 NYAP1Q6ZVC0 841 aa6.37□□□□□ -1.39
XRN1-209ENST00000472625 GPIHBP1Q8IV16 184 aa6.37□□□□□ -1.39
XRN1-209ENST00000472625 PXYLP1Q8TE99 480 aa6.36□□□□□ -1.39
XRN1-209ENST00000472625 ZC3H15Q8WU90 426 aaKnown RBP6.36□□□□□ -1.39
XRN1-209ENST00000472625 MTRQ99707 1265 aa6.36□□□□□ -1.39
XRN1-209ENST00000472625 ZMYND10O75800 440 aa6.35□□□□□ -1.39
XRN1-209ENST00000472625 TJAP1Q5JTD0 557 aa6.35□□□□□ -1.39
XRN1-209ENST00000472625 ZNF516Q92618 1163 aa6.35□□□□□ -1.39
XRN1-209ENST00000472625 POLA1P09884 1462 aaPredicted RBP6.34□□□□□ -1.39
XRN1-209ENST00000472625 COPS2P61201 443 aa6.34□□□□□ -1.39
XRN1-209ENST00000472625 METTL3Q86U44 580 aaKnown RBP6.34□□□□□ -1.39
XRN1-209ENST00000472625 IRX2Q9BZI1 471 aaPredicted RBP6.34□□□□□ -1.39
XRN1-209ENST00000472625 MAGI1Q96QZ7 1491 aaPredicted RBP6.34□□□□□ -1.4
XRN1-209ENST00000472625 TARBP1Q13395 1621 aaKnown RBP6.33□□□□□ -1.4
XRN1-209ENST00000472625 HDGFP51858 240 aaKnown RBP6.33□□□□□ -1.4
XRN1-209ENST00000472625 SYNJ1O43426 1573 aa6.32□□□□□ -1.4
XRN1-209ENST00000472625 DNAJB2P25686 324 aa6.32□□□□□ -1.4
XRN1-209ENST00000472625 SLF2Q8IX21 1173 aa6.32□□□□□ -1.4
XRN1-209ENST00000472625 NKX2-3Q8TAU0 364 aa6.32□□□□□ -1.4
XRN1-209ENST00000472625 NLRP7Q8WX94 980 aa6.32□□□□□ -1.4
XRN1-209ENST00000472625 TMEM134Q9H6X4 195 aa6.32□□□□□ -1.4
XRN1-209ENST00000472625 AQRO60306 1485 aaKnown RBP eCLIP6.31□□□□□ -1.4
XRN1-209ENST00000472625 RCCD1A6NED2 376 aa6.31□□□□□ -1.4
XRN1-209ENST00000472625 MAP2K5Q13163 448 aa6.31□□□□□ -1.4
XRN1-209ENST00000472625 BARGINQ6ZT62 677 aa6.31□□□□□ -1.4
XRN1-209ENST00000472625 RBM46Q8TBY0 533 aaKnown RBP6.31□□□□□ -1.4
XRN1-209ENST00000472625 TMUB1Q9BVT8 246 aa6.31□□□□□ -1.4
XRN1-209ENST00000472625 SOGA1O94964 1423 aa6.31□□□□□ -1.4
XRN1-209ENST00000472625 GRIN2BQ13224 1484 aa6.3□□□□□ -1.4
XRN1-209ENST00000472625 IRF6O14896 467 aa6.3□□□□□ -1.4
XRN1-209ENST00000472625 IL21Q9HBE4 155 aa6.3□□□□□ -1.4
XRN1-209ENST00000472625 SYNJ2O15056 1496 aa6.29□□□□□ -1.4
XRN1-209ENST00000472625 SNAPC4Q5SXM2 1469 aa6.29□□□□□ -1.4
XRN1-209ENST00000472625 FGD5Q6ZNL6 1462 aa6.29□□□□□ -1.4
XRN1-209ENST00000472625 ARAP1Q96P48 1450 aa6.29□□□□□ -1.4
XRN1-209ENST00000472625 CHD1O14646 1710 aa6.29□□□□□ -1.4
XRN1-209ENST00000472625 SLC10A3P09131 477 aa6.29□□□□□ -1.4
XRN1-209ENST00000472625 CYB5RLQ6IPT4 315 aa6.29□□□□□ -1.4
XRN1-209ENST00000472625 CHMP7Q8WUX9 453 aaPredicted RBP6.29□□□□□ -1.4
XRN1-209ENST00000472625 CCDC102AQ96A19 550 aa6.29□□□□□ -1.4
XRN1-209ENST00000472625 BCANQ96GW7 911 aa6.29□□□□□ -1.4
XRN1-209ENST00000472625 REPIN1Q9BWE0 567 aaKnown RBP6.29□□□□□ -1.4
XRN1-209ENST00000472625 TLL1O43897 1013 aa6.28□□□□□ -1.4
XRN1-209ENST00000472625 RGS20O76081 388 aa6.28□□□□□ -1.4
XRN1-209ENST00000472625 BLOC1S3Q6QNY0 202 aa6.28□□□□□ -1.4
XRN1-209ENST00000472625 CLASP1Q7Z460 1538 aa6.28□□□□□ -1.4
XRN1-209ENST00000472625 MINK1Q8N4C8 1332 aaPredicted RBP6.27□□□□□ -1.41
XRN1-209ENST00000472625 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.27□□□□□ -1.41
XRN1-209ENST00000472625 OATP04181 439 aa6.27□□□□□ -1.41
XRN1-209ENST00000472625 CFHP08603 1231 aa6.27□□□□□ -1.41
XRN1-209ENST00000472625 SLC4A3P48751 1232 aa6.27□□□□□ -1.41
XRN1-209ENST00000472625 PPP1R18Q6NYC8 613 aa6.27□□□□□ -1.41
XRN1-209ENST00000472625 PCDHB3Q9Y5E6 796 aa6.27□□□□□ -1.41
XRN1-209ENST00000472625 TDRD9Q8NDG6 1382 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms