RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 SAMD7Q7Z3H4 446 aa9.61□□□□□ -0.87
SYNE1-219ENST00000469439 FANCD2Q9BXW9 1451 aa9.59□□□□□ -0.87
SYNE1-219ENST00000469439 CEP164Q9UPV0 1460 aa9.58□□□□□ -0.88
SYNE1-219ENST00000469439 WRNQ14191 1432 aaPredicted RBP eCLIP9.57□□□□□ -0.88
SYNE1-219ENST00000469439 PTGDRQ13258 359 aa9.57□□□□□ -0.88
SYNE1-219ENST00000469439 ERCC6Q03468 1493 aa9.57□□□□□ -0.88
SYNE1-219ENST00000469439 SEMA3EO15041 775 aa9.56□□□□□ -0.88
SYNE1-219ENST00000469439 PPP4CP60510 307 aa9.56□□□□□ -0.88
SYNE1-219ENST00000469439 RGS20O76081 388 aa9.54□□□□□ -0.88
SYNE1-219ENST00000469439 HAP1P54257 671 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-219ENST00000469439 KCNC4Q03721 635 aa9.53□□□□□ -0.88
SYNE1-219ENST00000469439 EYA1Q99502 592 aa9.53□□□□□ -0.88
SYNE1-219ENST00000469439 PRDM2Q13029 1718 aa9.53□□□□□ -0.88
SYNE1-219ENST00000469439 NUTM2FA1L443 756 aa9.51□□□□□ -0.89
SYNE1-219ENST00000469439 RNF40O75150 1001 aa9.51□□□□□ -0.89
SYNE1-219ENST00000469439 SWT1Q5T5J6 900 aaKnown RBP9.51□□□□□ -0.89
SYNE1-219ENST00000469439 EEA1Q15075 1411 aa9.5□□□□□ -0.89
SYNE1-219ENST00000469439 NESP48681 1621 aa9.5□□□□□ -0.89
SYNE1-219ENST00000469439 TESPA1A2RU30 521 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-219ENST00000469439 HDGFP51858 240 aaKnown RBP9.5□□□□□ -0.89
SYNE1-219ENST00000469439 MRC2Q9UBG0 1479 aa9.48□□□□□ -0.89
SYNE1-219ENST00000469439 TJAP1Q5JTD0 557 aa9.48□□□□□ -0.89
SYNE1-219ENST00000469439 SLF2Q8IX21 1173 aa9.48□□□□□ -0.89
SYNE1-219ENST00000469439 ADGRG1Q9Y653 693 aa9.48□□□□□ -0.89
SYNE1-219ENST00000469439 FCHSD2O94868 740 aa9.47□□□□□ -0.89
SYNE1-219ENST00000469439 APLP1P51693 650 aa9.47□□□□□ -0.89
SYNE1-219ENST00000469439 NECTIN2Q92692 538 aa9.47□□□□□ -0.89
SYNE1-219ENST00000469439 KDM2AQ9Y2K7 1162 aa9.47□□□□□ -0.89
SYNE1-219ENST00000469439 DNAJB2P25686 324 aa9.46□□□□□ -0.9
SYNE1-219ENST00000469439 RBM46Q8TBY0 533 aaKnown RBP9.46□□□□□ -0.9
SYNE1-219ENST00000469439 MTRQ99707 1265 aa9.46□□□□□ -0.9
SYNE1-219ENST00000469439 DNMBPQ6XZF7 1577 aa9.46□□□□□ -0.9
SYNE1-219ENST00000469439 TOP2BQ02880 1626 aa9.45□□□□□ -0.9
SYNE1-219ENST00000469439 RBM26Q5T8P6 1007 aaKnown RBP9.45□□□□□ -0.9
SYNE1-219ENST00000469439 TMEM134Q9H6X4 195 aa9.44□□□□□ -0.9
SYNE1-219ENST00000469439 IL21Q9HBE4 155 aa9.44□□□□□ -0.9
SYNE1-219ENST00000469439 TOPBP1Q92547 1522 aa9.43□□□□□ -0.9
SYNE1-219ENST00000469439 HIC1Q14526 733 aa9.43□□□□□ -0.9
SYNE1-219ENST00000469439 FAM161AQ3B820 660 aa9.43□□□□□ -0.9
SYNE1-219ENST00000469439 SMYD5Q6GMV2 418 aa9.43□□□□□ -0.9
SYNE1-219ENST00000469439 GPR37O15354 613 aa9.42□□□□□ -0.9
SYNE1-219ENST00000469439 SLC4A3P48751 1232 aa9.42□□□□□ -0.9
SYNE1-219ENST00000469439 SOGA1O94964 1423 aa9.41□□□□□ -0.9
SYNE1-219ENST00000469439 KIF27Q86VH2 1401 aa9.41□□□□□ -0.9
SYNE1-219ENST00000469439 RCCD1A6NED2 376 aa9.41□□□□□ -0.9
SYNE1-219ENST00000469439 BIVM-ERCC5R4GMW8 1640 aa9.41□□□□□ -0.9
SYNE1-219ENST00000469439 CUX1P39880 1505 aa9.41□□□□□ -0.9
SYNE1-219ENST00000469439 PXYLP1Q8TE99 480 aa9.39□□□□□ -0.91
SYNE1-219ENST00000469439 ZNF516Q92618 1163 aa9.39□□□□□ -0.91
SYNE1-219ENST00000469439 WDR62O43379 1518 aa9.39□□□□□ -0.91
SYNE1-219ENST00000469439 IFT140Q96RY7 1462 aa9.39□□□□□ -0.91
SYNE1-219ENST00000469439 URB2Q14146 1524 aaKnown RBP9.38□□□□□ -0.91
SYNE1-219ENST00000469439 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.38□□□□□ -0.91
SYNE1-219ENST00000469439 PRR14Q9BWN1 585 aa9.38□□□□□ -0.91
SYNE1-219ENST00000469439 FGD5Q6ZNL6 1462 aa9.38□□□□□ -0.91
SYNE1-219ENST00000469439 CUX2O14529 1486 aa9.37□□□□□ -0.91
SYNE1-219ENST00000469439 GNPATO15228 680 aa9.37□□□□□ -0.91
SYNE1-219ENST00000469439 VSIG10Q8N0Z9 540 aa9.37□□□□□ -0.91
SYNE1-219ENST00000469439 IRX2Q9BZI1 471 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-219ENST00000469439 SYNJ1O43426 1573 aa9.37□□□□□ -0.91
SYNE1-219ENST00000469439 KIF21AQ7Z4S6 1674 aa9.36□□□□□ -0.91
SYNE1-219ENST00000469439 POLA1P09884 1462 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-219ENST00000469439 WDR97A6NE52 1622 aa9.36□□□□□ -0.91
SYNE1-219ENST00000469439 OATP04181 439 aa9.36□□□□□ -0.91
SYNE1-219ENST00000469439 FECHP22830 423 aa9.36□□□□□ -0.91
SYNE1-219ENST00000469439 COPS2P61201 443 aa9.36□□□□□ -0.91
SYNE1-219ENST00000469439 METTL3Q86U44 580 aaKnown RBP9.36□□□□□ -0.91
SYNE1-219ENST00000469439 ABCA10Q8WWZ4 1543 aa9.36□□□□□ -0.91
SYNE1-219ENST00000469439 PCDHB3Q9Y5E6 796 aa9.35□□□□□ -0.91
SYNE1-219ENST00000469439 PPP1R18Q6NYC8 613 aa9.34□□□□□ -0.91
SYNE1-219ENST00000469439 ZPR1O75312 459 aa9.33□□□□□ -0.92
SYNE1-219ENST00000469439 CFHP08603 1231 aa9.33□□□□□ -0.92
SYNE1-219ENST00000469439 SLC10A3P09131 477 aa9.33□□□□□ -0.92
SYNE1-219ENST00000469439 GPIHBP1Q8IV16 184 aa9.33□□□□□ -0.92
SYNE1-219ENST00000469439 NKX2-3Q8TAU0 364 aa9.33□□□□□ -0.92
SYNE1-219ENST00000469439 ACTN4O43707 911 aaKnown RBP9.32□□□□□ -0.92
SYNE1-219ENST00000469439 KMT5BQ4FZB7 885 aa9.32□□□□□ -0.92
SYNE1-219ENST00000469439 BLOC1S3Q6QNY0 202 aa9.32□□□□□ -0.92
SYNE1-219ENST00000469439 FAM9AQ8IZU1 332 aaPredicted RBP9.31□□□□□ -0.92
SYNE1-219ENST00000469439 THOC2Q8NI27 1593 aaKnown RBP9.3□□□□□ -0.92
SYNE1-219ENST00000469439 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.3□□□□□ -0.92
SYNE1-219ENST00000469439 GAPVD1Q14C86 1478 aa9.29□□□□□ -0.92
SYNE1-219ENST00000469439 GRIN2BQ13224 1484 aa9.28□□□□□ -0.92
SYNE1-219ENST00000469439 ERICH3Q5RHP9 1530 aa9.27□□□□□ -0.93
SYNE1-219ENST00000469439 TLL1O43897 1013 aa9.27□□□□□ -0.93
SYNE1-219ENST00000469439 PRKD2Q9BZL6 878 aa9.27□□□□□ -0.93
SYNE1-219ENST00000469439 RAD54L2Q9Y4B4 1467 aa9.27□□□□□ -0.93
SYNE1-219ENST00000469439 IGF1RP08069 1367 aa9.26□□□□□ -0.93
SYNE1-219ENST00000469439 CARMIL1Q5VZK9 1371 aa9.26□□□□□ -0.93
SYNE1-219ENST00000469439 TDRD9Q8NDG6 1382 aaKnown RBP9.26□□□□□ -0.93
SYNE1-219ENST00000469439 UBTFP17480 764 aaKnown RBP9.26□□□□□ -0.93
SYNE1-219ENST00000469439 GGCXP38435 758 aa9.26□□□□□ -0.93
SYNE1-219ENST00000469439 PHOX2BQ99453 314 aa9.25□□□□□ -0.93
SYNE1-219ENST00000469439 TMUB1Q9BVT8 246 aa9.25□□□□□ -0.93
SYNE1-219ENST00000469439 DAXXQ9UER7 740 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-219ENST00000469439 V9GY48 417 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-219ENST00000469439 NLRP7Q8WX94 980 aa9.24□□□□□ -0.93
SYNE1-219ENST00000469439 TARBP1Q13395 1621 aaKnown RBP9.23□□□□□ -0.93
SYNE1-219ENST00000469439 FHAD1B1AJZ9 1412 aa9.23□□□□□ -0.93
SYNE1-219ENST00000469439 GOLGA3Q08378 1498 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms