RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 AEBP2Q6ZN18 517 aaPredicted RBP23.96■■□□□ 1.43
SYNE1-219ENST00000469439 CHIC1Q5VXU3 224 aa22.95■■□□□ 1.26
SYNE1-219ENST00000469439 SENP3Q9H4L4 574 aaPredicted RBP20.39■□□□□ 0.85
SYNE1-219ENST00000469439 PHF23Q9BUL5 403 aaPredicted RBP20.14■□□□□ 0.81
SYNE1-219ENST00000469439 FOXD1Q16676 465 aa18.98■□□□□ 0.63
SYNE1-219ENST00000469439 PLPPR3Q6T4P5 718 aa18.41■□□□□ 0.54
SYNE1-219ENST00000469439 PPP6R1Q9UPN7 881 aa17.89■□□□□ 0.45
SYNE1-219ENST00000469439 ADRA2BP18089 450 aa17.84■□□□□ 0.45
SYNE1-219ENST00000469439 PIAS4Q8N2W9 510 aaPredicted RBP17.78■□□□□ 0.44
SYNE1-219ENST00000469439 MSH5O43196 834 aa17.69■□□□□ 0.42
SYNE1-219ENST00000469439 POTEDQ86YR6 584 aa17.26■□□□□ 0.35
SYNE1-219ENST00000469439 SCAF1Q9H7N4 1312 aaKnown RBP16.31■□□□□ 0.2
SYNE1-219ENST00000469439 MAPK8IP2Q13387 824 aaPredicted RBP16.31■□□□□ 0.2
SYNE1-219ENST00000469439 DMRT2Q9Y5R5 561 aa16.22■□□□□ 0.19
SYNE1-219ENST00000469439 PPP4R3CPQ6ZMV5 832 aa16.16■□□□□ 0.18
SYNE1-219ENST00000469439 CNKSR2Q8WXI2 1034 aa15.82■□□□□ 0.12
SYNE1-219ENST00000469439 HOXD11P31277 338 aaPredicted RBP15.71■□□□□ 0.11
SYNE1-219ENST00000469439 RNF216Q9NWF9 866 aaPredicted RBP15.63■□□□□ 0.09
SYNE1-219ENST00000469439 NCBP3Q53F19 620 aaKnown RBP15.58■□□□□ 0.08
SYNE1-219ENST00000469439 DCAF8L1A6NGE4 600 aa15.47■□□□□ 0.07
SYNE1-219ENST00000469439 NPM3O75607 178 aaKnown RBP15.38■□□□□ 0.05
SYNE1-219ENST00000469439 KCNA4P22459 653 aa15.27■□□□□ 0.04
SYNE1-219ENST00000469439 CACNB1Q02641 598 aaPredicted RBP15.14■□□□□ 0.01
SYNE1-219ENST00000469439 DNAJC5BQ9UF47 199 aa15.14■□□□□ 0.01
SYNE1-219ENST00000469439 RNF39Q9H2S5 420 aa15.12■□□□□ 0.01
SYNE1-219ENST00000469439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.91□□□□□ -0.02
SYNE1-219ENST00000469439 C1QBPQ07021 282 aaKnown RBP14.9□□□□□ -0.02
SYNE1-219ENST00000469439 U3KPZ7 1027 aaPredicted RBP14.67□□□□□ -0.06
SYNE1-219ENST00000469439 SLC4A2P04920 1241 aa14.65□□□□□ -0.06
SYNE1-219ENST00000469439 SLC4A1APQ9BWU0 796 aaKnown RBP14.44□□□□□ -0.1
SYNE1-219ENST00000469439 SPINK5Q9NQ38 1064 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-219ENST00000469439 CAPN15O75808 1086 aa14.32□□□□□ -0.12
SYNE1-219ENST00000469439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-219ENST00000469439 HNRNPUL2Q1KMD3 747 aaKnown RBP14.29□□□□□ -0.12
SYNE1-219ENST00000469439 APLP2Q06481 763 aa14.26□□□□□ -0.13
SYNE1-219ENST00000469439 MYCNP04198 464 aaPredicted RBP14.23□□□□□ -0.13
SYNE1-219ENST00000469439 SAMD1Q6SPF0 538 aaPredicted RBP14.23□□□□□ -0.13
SYNE1-219ENST00000469439 DSG3P32926 999 aa14.22□□□□□ -0.13
SYNE1-219ENST00000469439 FOXD4L1Q9NU39 408 aa14.2□□□□□ -0.14
SYNE1-219ENST00000469439 ZNF219Q9P2Y4 722 aaPredicted RBP14.15□□□□□ -0.14
SYNE1-219ENST00000469439 TRHP20396 242 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-219ENST00000469439 ZBTB22O15209 634 aa14.06□□□□□ -0.16
SYNE1-219ENST00000469439 ABCB7O75027 752 aa14.01□□□□□ -0.17
SYNE1-219ENST00000469439 ATF5Q9Y2D1 282 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-219ENST00000469439 POLA2Q14181 598 aa13.8□□□□□ -0.2
SYNE1-219ENST00000469439 ATXN8OSP0DMR3 200 aa13.74□□□□□ -0.21
SYNE1-219ENST00000469439 CSRNP3Q8WYN3 585 aa13.57□□□□□ -0.24
SYNE1-219ENST00000469439 ZBTB12Q9Y330 459 aaPredicted RBP13.57□□□□□ -0.24
SYNE1-219ENST00000469439 RBM42Q9BTD8 480 aaKnown RBP13.56□□□□□ -0.24
SYNE1-219ENST00000469439 POTEHQ6S545 545 aa13.52□□□□□ -0.25
SYNE1-219ENST00000469439 EHMT2Q96KQ7 1210 aa13.47□□□□□ -0.25
SYNE1-219ENST00000469439 OSCARQ8IYS5 282 aa13.39□□□□□ -0.27
SYNE1-219ENST00000469439 FBLN2P98095 1184 aa13.3□□□□□ -0.28
SYNE1-219ENST00000469439 AKT1S1Q96B36 256 aa13.29□□□□□ -0.28
SYNE1-219ENST00000469439 MKRN4PQ13434 485 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-219ENST00000469439 CHRDL2Q6WN34 429 aa13.18□□□□□ -0.3
SYNE1-219ENST00000469439 SPDYE2BA6NHP3 402 aa13.17□□□□□ -0.3
SYNE1-219ENST00000469439 SPDYE6P0CI01 402 aa13.17□□□□□ -0.3
SYNE1-219ENST00000469439 SPDYE2Q495Y8 402 aa13.17□□□□□ -0.3
SYNE1-219ENST00000469439 REM2Q8IYK8 340 aaPredicted RBP13.15□□□□□ -0.3
SYNE1-219ENST00000469439 NISCHQ9Y2I1 1504 aa13.12□□□□□ -0.31
SYNE1-219ENST00000469439 SSUH2Q9Y2M2 353 aa13.04□□□□□ -0.32
SYNE1-219ENST00000469439 PITPNM1O00562 1244 aa13.03□□□□□ -0.32
SYNE1-219ENST00000469439 ZNF692Q9BU19 519 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-219ENST00000469439 PIP4P2Q8N4L2 257 aa12.91□□□□□ -0.34
SYNE1-219ENST00000469439 FXR2P51116 673 aaKnown RBP eCLIP12.88□□□□□ -0.35
SYNE1-219ENST00000469439 SPDYE1Q8NFV5 336 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-219ENST00000469439 PABPN1Q86U42 306 aaKnown RBP eCLIP12.84□□□□□ -0.35
SYNE1-219ENST00000469439 CLEC11AQ9Y240 323 aa12.82□□□□□ -0.36
SYNE1-219ENST00000469439 SPDYE4A6NLX3 237 aa12.72□□□□□ -0.37
SYNE1-219ENST00000469439 PRKAR2AP13861 404 aaKnown RBP12.67□□□□□ -0.38
SYNE1-219ENST00000469439 PRR29P0C7W0 189 aa12.64□□□□□ -0.39
SYNE1-219ENST00000469439 SP7Q8TDD2 431 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-219ENST00000469439 HAX1O00165 279 aa12.61□□□□□ -0.39
SYNE1-219ENST00000469439 CHADLQ6NUI6 762 aa12.57□□□□□ -0.4
SYNE1-219ENST00000469439 STAG3Q9UJ98 1225 aa12.53□□□□□ -0.4
SYNE1-219ENST00000469439 PROM2Q8N271 834 aa12.5□□□□□ -0.41
SYNE1-219ENST00000469439 EVX2Q03828 476 aa12.48□□□□□ -0.41
SYNE1-219ENST00000469439 C19orf67A6NJJ6 358 aa12.46□□□□□ -0.41
SYNE1-219ENST00000469439 FARP1Q9Y4F1 1045 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-219ENST00000469439 CREBZFQ9NS37 354 aa12.41□□□□□ -0.42
SYNE1-219ENST00000469439 CD44P16070 742 aaKnown RBP12.29□□□□□ -0.44
SYNE1-219ENST00000469439 FKBP8Q14318 412 aa12.28□□□□□ -0.44
SYNE1-219ENST00000469439 MNX1P50219 401 aaPredicted RBP12.24□□□□□ -0.45
SYNE1-219ENST00000469439 GABBR2O75899 941 aa12.2□□□□□ -0.46
SYNE1-219ENST00000469439 NPM1P06748 294 aaKnown RBP eCLIP12.16□□□□□ -0.46
SYNE1-219ENST00000469439 ZNF579Q8NAF0 562 aaKnown RBP12.14□□□□□ -0.47
SYNE1-219ENST00000469439 ZRANB1Q9UGI0 708 aa12.14□□□□□ -0.47
SYNE1-219ENST00000469439 CLCN6P51797 869 aa12.1□□□□□ -0.47
SYNE1-219ENST00000469439 PAK3O75914 559 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-219ENST00000469439 MIER1Q8N108 512 aa12.07□□□□□ -0.48
SYNE1-219ENST00000469439 PLEKHG5O94827 1062 aa12.06□□□□□ -0.48
SYNE1-219ENST00000469439 PLCD3Q8N3E9 789 aa12.01□□□□□ -0.49
SYNE1-219ENST00000469439 PHF12Q96QT6 1004 aa12□□□□□ -0.49
SYNE1-219ENST00000469439 FBXO3Q9UK99 471 aa11.97□□□□□ -0.49
SYNE1-219ENST00000469439 GALR2O43603 387 aaPredicted RBP11.96□□□□□ -0.49
SYNE1-219ENST00000469439 POTEIP0CG38 1075 aa11.96□□□□□ -0.49
SYNE1-219ENST00000469439 TSPYL2Q9H2G4 693 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-219ENST00000469439 ZBTB47Q9UFB7 747 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-219ENST00000469439 RASEFQ8IZ41 740 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms