RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Sox12Q04890 314 aa12.83□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Bcl11aQ9QYE3 773 aa12.83□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Spryd3E9Q9B3 442 aa12.82□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 PnnO35691 725 aaKnown RBP12.82□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 CatipB9EKE5 520 aa12.82□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Sh3bp5Q9Z131 463 aa12.81□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Igf1rQ60751 1373 aa12.81□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Slx4Q6P1D7 1565 aa12.81□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Gnai1B2RSH2 354 aa12.8□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Gnai3Q9DC51 354 aa12.8□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Washc2Q6PGL7 1334 aa12.8□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 ChgaP26339 463 aaKnown RBP12.79□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Swt1Q9DBQ9 907 aa12.79□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Camsap2Q8C1B1 1461 aa12.79□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Rsph3aQ3UFY4 516 aa12.79□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Gm973E9Q295 1059 aa12.79□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Zfp444Q3TDV8 331 aaKnown RBP12.78□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Ccdc171E9Q1U1 1324 aa12.78□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Tnnt1O88346 262 aa12.78□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Rtn4Q99P72 1162 aaKnown RBP12.78□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Nol10Q5RJG1 687 aaKnown RBP12.77□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Polr3aB2RXC6 1390 aa12.77□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 MecomP14404 1042 aa12.77□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Q7TT23 1179 aa12.77□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Cabp4Q8VHC5 271 aa12.77□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Rprd2Q6NXI6 1469 aaKnown RBP12.77□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Naip5Q9R016 1403 aa12.77□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Gprasp1Q5U4C1 1347 aa12.76□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Gpatch8A2A6A1 1505 aa12.76□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 GorabQ8BRM2 368 aa12.76□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 R3hcc1Q8BSI6 488 aa12.76□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Rassf8Q8CJ96 419 aa12.76□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Cetn4Q8K4K1 168 aa12.76□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Ncoa1P70365 1447 aa12.75□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Ccdc146E9Q9F7 977 aa12.75□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Ak7Q9D2H2 614 aa12.75□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Atp2b2Q9R0K7 1198 aa12.75□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Pik3c2gO70167 1506 aa12.74□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Rabep1O35551 862 aa12.74□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Slc52a2Q9D8F3 450 aa12.74□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Neo1P97798 1493 aa12.73□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Iffo2Q8R2V2 512 aa12.73□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Erich6bQ9D4S6 220 aa12.73□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Pibf1E9Q6K3 756 aa12.73□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Glipr1l2Q9CQ35 332 aa12.73□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Cavin4A2AMM0 362 aa12.72□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Rbm25B2RY56 838 aaKnown RBP12.72□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Gm1043A0A140LJC2 1431 aa12.72□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Gsdma3Q5Y4Y6 464 aa12.72□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Cald1E9QA15 768 aaKnown RBP12.71□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Lmod3E9QA62 571 aa12.71□□□□□ -0.37
Ccdc40-201ENSMUST00000035935 Ttll13A4Q9F6 804 aa12.71□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Usp16Q99LG0 825 aa12.71□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 PrxO55103 1391 aa12.7□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Ecm2Q5FW85 670 aa12.7□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Eif4g1Q6NZJ6 1600 aaKnown RBP12.7□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Casq1O09165 405 aa12.7□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Pcmtd1P59913 357 aa12.7□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Mcm2P97310 904 aa12.69□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Pank1Q8K4K6 548 aa12.69□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Q9D9H8 365 aa12.69□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Brpf1B2RRD7 1212 aa12.69□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Fam135aQ6NS59 1506 aa12.69□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 St18Q80TY4 1045 aa12.69□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Ric3Q8BPM6 367 aa12.69□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Rrp12Q6P5B0 1295 aaKnown RBP12.68□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 3425401B19RikD3Z1D3 1412 aa12.68□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Gm21190A0A0G2JGJ6 266 aa12.68□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Ccdc183A2AJB1 534 aa12.68□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Ythdc1E9Q5K9 736 aaKnown RBP12.68□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Fancd2Q80V62 1450 aa12.68□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Ttc21bQ0HA38 1315 aa12.68□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Fchsd2Q3USJ8 740 aa12.67□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Slc4a10Q5DTL9 1118 aa12.67□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Senp3Q9EP97 568 aaKnown RBP12.67□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Peg3Q3URU2 1571 aa12.67□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Filip1lQ6P6L0 1131 aa12.67□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Ddrgk1Q80WW9 315 aa12.67□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Erich3F6QRE9 1637 aa12.66□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Ppp2r3aB2RXC8 1150 aa12.66□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Tceal9Q9DD24 104 aa12.66□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Thoc2B1AZI6 1594 aaKnown RBP12.66□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Eif2s2Q99L45 331 aaKnown RBP12.66□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 MlecQ6ZQI3 291 aaKnown RBP12.66□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Rapgef6Q5NCJ1 1609 aa12.65□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Triml2E9PW10 424 aa12.65□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 KinQ8K339 391 aa12.65□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 SkilQ60665 675 aa12.65□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Ncoa3O09000 1398 aa12.65□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 CgnP59242 1191 aa12.65□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 IbtkQ6ZPR6 1352 aaKnown RBP12.65□□□□□ -0.38
Ccdc40-201ENSMUST00000035935 Hoxa7P02830 229 aa12.64□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Smc4Q8CG47 1286 aa12.64□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Map4k4P97820 1233 aaKnown RBP12.64□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Cspp1B2RX88 1205 aa12.64□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 BC005561E9Q5E2 1589 aa12.63□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Fyb1O35601 819 aa12.63□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Chmp3Q9CQ10 224 aa12.63□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 AI481877A2ALV5 1481 aa12.63□□□□□ -0.39
Ccdc40-201ENSMUST00000035935 Dnai2A2AC93 623 aa12.62□□□□□ -0.39
Retrieved 100 of 22,080 RNA–protein pairs in 47.6 ms