RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W YCL048W-AQ2V2Q2 79 aa5.11□□□□□ -1.59
CAF40YNL288W RPL3P14126 387 aaKnown RBP5.1□□□□□ -1.59
CAF40YNL288W FLO10P36170 1169 aa5.1□□□□□ -1.59
CAF40YNL288W YHR122WP38829 231 aa5.1□□□□□ -1.59
CAF40YNL288W CTR2P38865 189 aa5.1□□□□□ -1.59
CAF40YNL288W SLM1P40485 686 aa5.1□□□□□ -1.59
CAF40YNL288W LSM1P47017 172 aaKnown RBP5.1□□□□□ -1.59
CAF40YNL288W YHC3P47040 408 aa5.1□□□□□ -1.59
CAF40YNL288W YJR096WP47137 282 aa5.1□□□□□ -1.59
CAF40YNL288W AIM25P47140 327 aa5.1□□□□□ -1.59
CAF40YNL288W ARO8P53090 500 aaKnown RBP5.1□□□□□ -1.59
CAF40YNL288W CAC2Q04199 468 aa5.1□□□□□ -1.59
CAF40YNL288W YDR114CQ04597 100 aa5.1□□□□□ -1.59
CAF40YNL288W PEX10Q05568 337 aa5.1□□□□□ -1.59
CAF40YNL288W YLR031WQ07978 186 aa5.1□□□□□ -1.59
CAF40YNL288W URA3P03962 267 aa5.09□□□□□ -1.59
CAF40YNL288W GDH1P07262 454 aaKnown RBP5.09□□□□□ -1.59
CAF40YNL288W PET54P10834 293 aa5.09□□□□□ -1.59
CAF40YNL288W CDC23P16522 626 aa5.09□□□□□ -1.59
CAF40YNL288W OCH1P31755 480 aa5.09□□□□□ -1.59
CAF40YNL288W IES6P32617 166 aa5.09□□□□□ -1.59
CAF40YNL288W SWD2P36104 329 aaPredicted RBP5.09□□□□□ -1.59
CAF40YNL288W NTC20P38302 140 aaPredicted RBP5.09□□□□□ -1.59
CAF40YNL288W PRM5P40476 318 aa5.09□□□□□ -1.59
CAF40YNL288W BMT5P40493 336 aa5.09□□□□□ -1.59
CAF40YNL288W DIE2P50076 525 aa5.09□□□□□ -1.59
CAF40YNL288W OKP1P53298 406 aa5.09□□□□□ -1.59
CAF40YNL288W PRM15Q03262 622 aa5.09□□□□□ -1.59
CAF40YNL288W YDR286CQ05530 114 aa5.09□□□□□ -1.59
CAF40YNL288W PHO92Q06390 306 aa5.09□□□□□ -1.59
CAF40YNL288W IRC25Q07951 179 aa5.09□□□□□ -1.59
CAF40YNL288W CSI2Q08054 341 aa5.09□□□□□ -1.59
CAF40YNL288W YOR385WQ08909 290 aa5.09□□□□□ -1.59
CAF40YNL288W HTZ1Q12692 134 aaKnown RBP5.09□□□□□ -1.59
CAF40YNL288W YLL053CP0CD98 152 aa5.08□□□□□ -1.6
CAF40YNL288W ACH1P32316 526 aa5.08□□□□□ -1.6
CAF40YNL288W RNP1P32385 249 aa5.08□□□□□ -1.6
CAF40YNL288W FMT1P32785 401 aa5.08□□□□□ -1.6
CAF40YNL288W SOR1P35497 357 aaKnown RBP5.08□□□□□ -1.6
CAF40YNL288W MRPL27P36526 146 aaPredicted RBP5.08□□□□□ -1.6
CAF40YNL288W PAC2P39937 518 aa5.08□□□□□ -1.6
CAF40YNL288W LSM4P40070 187 aaKnown RBP5.08□□□□□ -1.6
CAF40YNL288W PIR5P46999 287 aa5.08□□□□□ -1.6
CAF40YNL288W SOL1P50278 321 aa5.08□□□□□ -1.6
CAF40YNL288W RSM27P53305 110 aa5.08□□□□□ -1.6
CAF40YNL288W ALG9P53868 555 aaKnown RBP5.08□□□□□ -1.6
CAF40YNL288W ARG5,6Q01217 863 aa5.08□□□□□ -1.6
CAF40YNL288W YML018CQ03730 393 aa5.08□□□□□ -1.6
CAF40YNL288W NOC4Q06512 552 aaPredicted RBP5.08□□□□□ -1.6
CAF40YNL288W SOR2Q07786 357 aa5.08□□□□□ -1.6
CAF40YNL288W YDL009CQ12210 107 aa5.08□□□□□ -1.6
CAF40YNL288W MED4Q12343 284 aa5.08□□□□□ -1.6
CAF40YNL288W PET20Q99373 253 aa5.08□□□□□ -1.6
CAF40YNL288W GAL1P04385 528 aa5.07□□□□□ -1.6
CAF40YNL288W RPL15AP05748 204 aaKnown RBP5.07□□□□□ -1.6
CAF40YNL288W ATG22P25568 528 aa5.07□□□□□ -1.6
CAF40YNL288W NPL6P32832 435 aa5.07□□□□□ -1.6
CAF40YNL288W MRPL3P36516 390 aa5.07□□□□□ -1.6
CAF40YNL288W FIG1P38224 298 aa5.07□□□□□ -1.6
CAF40YNL288W GZF3P42944 551 aaKnown RBP5.07□□□□□ -1.6
CAF40YNL288W YJR011CP47086 261 aaPredicted RBP5.07□□□□□ -1.6
CAF40YNL288W RPL15BP54780 204 aaPredicted RBP5.07□□□□□ -1.6
CAF40YNL288W HSK3P69852 69 aa5.07□□□□□ -1.6
CAF40YNL288W ATG33Q06485 197 aa5.07□□□□□ -1.6
CAF40YNL288W PRP11Q07350 266 aaPredicted RBP5.07□□□□□ -1.6
CAF40YNL288W RFM1Q12192 310 aa5.07□□□□□ -1.6
CAF40YNL288W VAM3Q12241 283 aa5.07□□□□□ -1.6
CAF40YNL288W DGK1Q12382 290 aa5.07□□□□□ -1.6
CAF40YNL288W YMR105W-AQ8TGS8 64 aa5.07□□□□□ -1.6
CAF40YNL288W UBA3Q99344 299 aa5.07□□□□□ -1.6
CAF40YNL288W Q0142Q9ZZW4 58 aa5.07□□□□□ -1.6
CAF40YNL288W SPS2P08459 502 aa5.06□□□□□ -1.6
CAF40YNL288W FUS3P16892 353 aaKnown RBP5.06□□□□□ -1.6
CAF40YNL288W ATP10P18496 279 aa5.06□□□□□ -1.6
CAF40YNL288W CPR4P25334 318 aa5.06□□□□□ -1.6
CAF40YNL288W AGA2P32781 87 aa5.06□□□□□ -1.6
CAF40YNL288W RPB7P34087 171 aa5.06□□□□□ -1.6
CAF40YNL288W CPR5P35176 225 aa5.06□□□□□ -1.6
CAF40YNL288W SWD3P38123 315 aa5.06□□□□□ -1.6
CAF40YNL288W YBR242WP38331 238 aa5.06□□□□□ -1.6
CAF40YNL288W TTI2P47168 421 aa5.06□□□□□ -1.6
CAF40YNL288W SLX9P53251 210 aaPredicted RBP5.06□□□□□ -1.6
CAF40YNL288W SMX3P54999 86 aaPredicted RBP5.06□□□□□ -1.6
CAF40YNL288W RPL21AQ02753 160 aaKnown RBP5.06□□□□□ -1.6
CAF40YNL288W FIT1Q04433 528 aa5.06□□□□□ -1.6
CAF40YNL288W YOR029WQ12243 111 aa5.06□□□□□ -1.6
CAF40YNL288W BBP1Q12365 385 aa5.06□□□□□ -1.6
CAF40YNL288W RPL21BQ12672 160 aaKnown RBP5.06□□□□□ -1.6
CAF40YNL288W YLR365WQ7LIF2 110 aa5.06□□□□□ -1.6
CAF40YNL288W VMA8P32610 256 aaKnown RBP5.05□□□□□ -1.6
CAF40YNL288W YUH1P35127 236 aa5.05□□□□□ -1.6
CAF40YNL288W YKE4P40544 346 aa5.05□□□□□ -1.6
CAF40YNL288W UBC11P52492 156 aa5.05□□□□□ -1.6
CAF40YNL288W SYM1Q06563 197 aa5.05□□□□□ -1.6
CAF40YNL288W ARR2Q06597 130 aa5.05□□□□□ -1.6
CAF40YNL288W SCP1Q08873 200 aa5.05□□□□□ -1.6
CAF40YNL288W RDI1Q12434 202 aa5.05□□□□□ -1.6
CAF40YNL288W YER145C-AA0A023PYF4 145 aa5.04□□□□□ -1.6
CAF40YNL288W NHP6BP11633 99 aaKnown RBP5.04□□□□□ -1.6
CAF40YNL288W CKA1P15790 372 aa5.04□□□□□ -1.6
Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms