RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W KRE28Q04431 385 aa0.62□□□□□ -2.31
RPF1YHR088W GPM2Q12008 311 aa0.62□□□□□ -2.31
RPF1YHR088W YLR156WP0CE96 114 aa0.61□□□□□ -2.31
RPF1YHR088W YLR159WP0CE97 114 aa0.61□□□□□ -2.31
RPF1YHR088W YLR161WP0CE98 114 aa0.61□□□□□ -2.31
RPF1YHR088W RPT5P33297 434 aaKnown RBP0.61□□□□□ -2.31
RPF1YHR088W MRPL28P36527 147 aa0.61□□□□□ -2.31
RPF1YHR088W RTT105P40063 208 aa0.61□□□□□ -2.31
RPF1YHR088W RCE1Q03530 315 aa0.61□□□□□ -2.31
RPF1YHR088W SPT3P06844 337 aa0.6□□□□□ -2.31
RPF1YHR088W YHL042WP38729 150 aa0.6□□□□□ -2.31
RPF1YHR088W CWC27Q02770 301 aa0.6□□□□□ -2.31
RPF1YHR088W YOR029WQ12243 111 aa0.6□□□□□ -2.31
RPF1YHR088W TUS1Q06412 1307 aa0.6□□□□□ -2.31
RPF1YHR088W BCY1P07278 416 aaKnown RBP0.59□□□□□ -2.31
RPF1YHR088W PRM8P53174 237 aa0.59□□□□□ -2.31
RPF1YHR088W MRPL50P53724 139 aa0.59□□□□□ -2.31
RPF1YHR088W YNL247WP53852 767 aaKnown RBP0.59□□□□□ -2.31
RPF1YHR088W SLH1P53327 1967 aaKnown RBP0.59□□□□□ -2.32
RPF1YHR088W YLR236CA0A023PZG4 107 aa0.58□□□□□ -2.32
RPF1YHR088W CDC10P25342 322 aaKnown RBP0.58□□□□□ -2.32
RPF1YHR088W YBR285WP38354 144 aa0.58□□□□□ -2.32
RPF1YHR088W GVP36P40531 326 aaKnown RBP0.58□□□□□ -2.32
RPF1YHR088W NUP84P52891 726 aa0.58□□□□□ -2.32
RPF1YHR088W KAP95Q06142 861 aaKnown RBP0.58□□□□□ -2.32
RPF1YHR088W PAM18Q07914 168 aa0.58□□□□□ -2.32
RPF1YHR088W TIM9O74700 87 aa0.57□□□□□ -2.32
RPF1YHR088W YHR212W-AP0CX91 67 aa0.57□□□□□ -2.32
RPF1YHR088W SEC11P15367 167 aa0.57□□□□□ -2.32
RPF1YHR088W RPO26P20435 155 aa0.57□□□□□ -2.32
RPF1YHR088W MRPL25P23369 157 aa0.57□□□□□ -2.32
RPF1YHR088W CUE1P38428 203 aa0.57□□□□□ -2.32
RPF1YHR088W NSA1P53136 463 aaPredicted RBP0.57□□□□□ -2.32
RPF1YHR088W CUE4Q04201 117 aaPredicted RBP0.57□□□□□ -2.32
RPF1YHR088W LCL2Q08045 131 aa0.57□□□□□ -2.32
RPF1YHR088W SIR2P06700 562 aa0.56□□□□□ -2.32
RPF1YHR088W SEC17P32602 292 aa0.56□□□□□ -2.32
RPF1YHR088W NTF2P33331 125 aaKnown RBP0.56□□□□□ -2.32
RPF1YHR088W YER034WP40022 185 aaKnown RBP0.56□□□□□ -2.32
RPF1YHR088W TRM9P49957 279 aa0.56□□□□□ -2.32
RPF1YHR088W YHR007C-AQ07074 71 aa0.56□□□□□ -2.32
RPF1YHR088W MCP1Q12106 302 aa0.56□□□□□ -2.32
RPF1YHR088W ATG31Q12421 196 aa0.56□□□□□ -2.32
RPF1YHR088W TCA17P32613 152 aa0.55□□□□□ -2.32
RPF1YHR088W YLR173WQ06247 608 aa0.55□□□□□ -2.32
RPF1YHR088W ACC1Q00955 2233 aaKnown RBP0.54□□□□□ -2.32
RPF1YHR088W SKG1P36169 355 aa0.54□□□□□ -2.32
RPF1YHR088W VMA22P38784 181 aa0.54□□□□□ -2.32
RPF1YHR088W BNA6P43619 295 aa0.54□□□□□ -2.32
RPF1YHR088W EAF6P47128 113 aa0.54□□□□□ -2.32
RPF1YHR088W SRL4Q03085 281 aa0.54□□□□□ -2.32
RPF1YHR088W CDC123Q05791 360 aa0.54□□□□□ -2.32
RPF1YHR088W YOL160WQ08321 113 aa0.54□□□□□ -2.32
RPF1YHR088W YOL107WQ12239 342 aa0.54□□□□□ -2.32
RPF1YHR088W DRS2P39524 1355 aa0.54□□□□□ -2.32
RPF1YHR088W HYR1P40581 163 aaKnown RBP0.53□□□□□ -2.32
RPF1YHR088W FAR7P43592 221 aa0.53□□□□□ -2.32
RPF1YHR088W DBF2P22204 572 aa0.52□□□□□ -2.33
RPF1YHR088W RIB7P33312 244 aa0.52□□□□□ -2.33
RPF1YHR088W LIA1P47120 325 aaKnown RBP0.52□□□□□ -2.33
RPF1YHR088W YNL134CP53912 376 aaKnown RBP0.52□□□□□ -2.33
RPF1YHR088W RAD28Q12021 506 aa0.52□□□□□ -2.33
RPF1YHR088W TDA8Q6B2U8 126 aa0.52□□□□□ -2.33
RPF1YHR088W MDM35O60200 86 aa0.51□□□□□ -2.33
RPF1YHR088W URA5P13298 226 aaKnown RBP0.51□□□□□ -2.33
RPF1YHR088W URA6P15700 204 aa0.51□□□□□ -2.33
RPF1YHR088W APS1P35181 156 aa0.51□□□□□ -2.33
RPF1YHR088W UTP30P36144 274 aaKnown RBP0.51□□□□□ -2.33
RPF1YHR088W PRE6P40303 254 aaKnown RBP0.51□□□□□ -2.33
RPF1YHR088W YFH7P43591 353 aa0.51□□□□□ -2.33
RPF1YHR088W RPC17P47076 161 aa0.51□□□□□ -2.33
RPF1YHR088W YMR252CQ04814 134 aa0.51□□□□□ -2.33
RPF1YHR088W MED4Q12343 284 aa0.51□□□□□ -2.33
RPF1YHR088W RRP36Q12481 300 aaPredicted RBP0.51□□□□□ -2.33
RPF1YHR088W BRR6P53062 197 aa0.5□□□□□ -2.33
RPF1YHR088W YDR249CQ03787 373 aa0.5□□□□□ -2.33
RPF1YHR088W YLR283WQ05867 314 aa0.5□□□□□ -2.33
RPF1YHR088W CDC36P06100 191 aaPredicted RBP0.49□□□□□ -2.33
RPF1YHR088W YEA4P40004 342 aa0.49□□□□□ -2.33
RPF1YHR088W FMC1P40491 155 aa0.49□□□□□ -2.33
RPF1YHR088W MIC26P50087 233 aa0.49□□□□□ -2.33
RPF1YHR088W RRT8Q08219 342 aa0.49□□□□□ -2.33
RPF1YHR088W CDC28P00546 298 aaKnown RBP0.48□□□□□ -2.33
RPF1YHR088W BET1P22804 142 aa0.48□□□□□ -2.33
RPF1YHR088W IDH1P28834 360 aaKnown RBP RIP-Chip data0.48□□□□□ -2.33not detected
RPF1YHR088W LDB7P38210 180 aa0.48□□□□□ -2.33
RPF1YHR088W HPA3P39979 161 aa0.48□□□□□ -2.33
RPF1YHR088W FYV6P53913 173 aa0.48□□□□□ -2.33
RPF1YHR088W YRA1Q12159 226 aaKnown RBP0.48□□□□□ -2.33
RPF1YHR088W SEC4P07560 215 aaKnown RBP0.47□□□□□ -2.33
RPF1YHR088W RPL27AP0C2H6 136 aaKnown RBP0.47□□□□□ -2.33
RPF1YHR088W KSS1P14681 368 aa0.47□□□□□ -2.33
RPF1YHR088W STP22P25604 385 aa0.47□□□□□ -2.33
RPF1YHR088W SSO1P32867 290 aa0.47□□□□□ -2.33
RPF1YHR088W YUH1P35127 236 aa0.47□□□□□ -2.33
RPF1YHR088W ECM4P36156 370 aa0.47□□□□□ -2.33
RPF1YHR088W COX15P40086 486 aa0.47□□□□□ -2.33
RPF1YHR088W LAP3Q01532 483 aaKnown RBP RIP-Chip data0.47□□□□□ -2.33not detected
RPF1YHR088W YPR174CQ06616 221 aaPredicted RBP0.47□□□□□ -2.33
RPF1YHR088W RPB3P16370 318 aaKnown RBP0.46□□□□□ -2.34
Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms