RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W ASF2P32448 525 aaPredicted RBP2.17□□□□□ -2.06
UPF3YGR072W TCA17P32613 152 aa2.17□□□□□ -2.06
UPF3YGR072W UTR5P32630 166 aa2.17□□□□□ -2.06
UPF3YGR072W PTM1P32857 523 aa2.17□□□□□ -2.06
UPF3YGR072W CAF4P36130 643 aa2.17□□□□□ -2.06
UPF3YGR072W SLM2P53955 656 aa2.17□□□□□ -2.06
UPF3YGR072W CDD1Q06549 142 aa2.17□□□□□ -2.06
UPF3YGR072W HRT1Q08273 121 aa2.17□□□□□ -2.06
UPF3YGR072W CDC7P06243 507 aa2.16□□□□□ -2.06
UPF3YGR072W MAG1P22134 296 aaKnown RBP2.16□□□□□ -2.06
UPF3YGR072W SEC72P39742 193 aaKnown RBP2.16□□□□□ -2.06
UPF3YGR072W MNN5P46982 586 aa2.16□□□□□ -2.06
UPF3YGR072W COS6P53344 381 aa2.16□□□□□ -2.06
UPF3YGR072W GAS3Q03655 524 aa2.16□□□□□ -2.06
UPF3YGR072W YET3Q07451 203 aa2.16□□□□□ -2.06
UPF3YGR072W PSF1Q12488 208 aa2.16□□□□□ -2.06
UPF3YGR072W KSS1P14681 368 aa2.15□□□□□ -2.07
UPF3YGR072W ADE1P27616 306 aa2.15□□□□□ -2.07
UPF3YGR072W HMF1P40037 129 aaKnown RBP2.15□□□□□ -2.07
UPF3YGR072W AIM25P47140 327 aa2.15□□□□□ -2.07
UPF3YGR072W YGR050CP53231 118 aa2.15□□□□□ -2.07
UPF3YGR072W YGR219WP53307 113 aa2.15□□□□□ -2.07
UPF3YGR072W CAB4P53332 305 aa2.15□□□□□ -2.07
UPF3YGR072W RTC4P53850 401 aa2.15□□□□□ -2.07
UPF3YGR072W DIA1P54005 336 aa2.15□□□□□ -2.07
UPF3YGR072W MIX17Q03667 156 aa2.15□□□□□ -2.07
UPF3YGR072W YNG1Q08465 219 aa2.15□□□□□ -2.07
UPF3YGR072W REP2P03872 296 aa2.14□□□□□ -2.07
UPF3YGR072W YLR156WP0CE96 114 aa2.14□□□□□ -2.07
UPF3YGR072W YLR159WP0CE97 114 aa2.14□□□□□ -2.07
UPF3YGR072W YLR161WP0CE98 114 aa2.14□□□□□ -2.07
UPF3YGR072W GRX2P17695 143 aaKnown RBP2.14□□□□□ -2.07
UPF3YGR072W MRPS28P21771 286 aa2.14□□□□□ -2.07
UPF3YGR072W APA2P22108 325 aa2.14□□□□□ -2.07
UPF3YGR072W SCO1P23833 295 aa2.14□□□□□ -2.07
UPF3YGR072W SHG1P38337 142 aa2.14□□□□□ -2.07
UPF3YGR072W YJR146WP47174 117 aa2.14□□□□□ -2.07
UPF3YGR072W COG5P53951 403 aa2.14□□□□□ -2.07
UPF3YGR072W PET191Q02772 108 aa2.14□□□□□ -2.07
UPF3YGR072W FUS2Q05670 677 aa2.14□□□□□ -2.07
UPF3YGR072W VPS68Q12016 184 aa2.14□□□□□ -2.07
UPF3YGR072W ATO3Q12359 275 aa2.14□□□□□ -2.07
UPF3YGR072W EMC6Q12431 108 aa2.14□□□□□ -2.07
UPF3YGR072W YHR214C-EQ8TGK0 99 aa2.14□□□□□ -2.07
UPF3YGR072W URA5P13298 226 aaKnown RBP2.13□□□□□ -2.07
UPF3YGR072W BET1P22804 142 aa2.13□□□□□ -2.07
UPF3YGR072W EGD2P38879 174 aaKnown RBP2.13□□□□□ -2.07
UPF3YGR072W SMD3P43321 101 aaKnown RBP2.13□□□□□ -2.07
UPF3YGR072W AIF1P52923 378 aa2.13□□□□□ -2.07
UPF3YGR072W NEJ1Q06148 342 aa2.13□□□□□ -2.07
UPF3YGR072W ARR2Q06597 130 aa2.13□□□□□ -2.07
UPF3YGR072W YPL162CQ12042 273 aa2.13□□□□□ -2.07
UPF3YGR072W TSC3Q3E790 80 aa2.13□□□□□ -2.07
UPF3YGR072W SIR2P06700 562 aa2.12□□□□□ -2.07
UPF3YGR072W MRS1P07266 363 aa2.12□□□□□ -2.07
UPF3YGR072W CKS1P20486 150 aaKnown RBP2.12□□□□□ -2.07
UPF3YGR072W MDH3P32419 343 aaKnown RBP RIP-Chip data2.12□□□□□ -2.07not detected
UPF3YGR072W CTR2P38865 189 aa2.12□□□□□ -2.07
UPF3YGR072W GLE2P40066 365 aa2.12□□□□□ -2.07
UPF3YGR072W PDS1P40316 373 aaPredicted RBP2.12□□□□□ -2.07
UPF3YGR072W CIS3P47001 227 aa2.12□□□□□ -2.07
UPF3YGR072W SWP1Q02795 286 aa2.12□□□□□ -2.07
UPF3YGR072W YOL160WQ08321 113 aa2.12□□□□□ -2.07
UPF3YGR072W YDL085C-AQ3E7B7 68 aaKnown RBP2.12□□□□□ -2.07
UPF3YGR072W IGO2Q9P305 131 aa2.12□□□□□ -2.07
UPF3YGR072W IKI3Q06706 1349 aaKnown RBP2.12□□□□□ -2.07
UPF3YGR072W SEC17P32602 292 aa2.11□□□□□ -2.07
UPF3YGR072W VPS51P36116 164 aa2.11□□□□□ -2.07
UPF3YGR072W UTP30P36144 274 aaKnown RBP2.11□□□□□ -2.07
UPF3YGR072W MED6P38782 295 aa2.11□□□□□ -2.07
UPF3YGR072W PGD1P40356 397 aa2.11□□□□□ -2.07
UPF3YGR072W YDR249CQ03787 373 aa2.11□□□□□ -2.07
UPF3YGR072W TRM12Q04235 462 aa2.11□□□□□ -2.07
UPF3YGR072W YLR036CQ07986 203 aa2.11□□□□□ -2.07
UPF3YGR072W FKS1P38631 1876 aaKnown RBP2.11□□□□□ -2.07
UPF3YGR072W RPB3P16370 318 aaKnown RBP2.1□□□□□ -2.07
UPF3YGR072W TAH1P25638 111 aaPredicted RBP2.1□□□□□ -2.07
UPF3YGR072W AIM2P39721 246 aa2.1□□□□□ -2.07
UPF3YGR072W DAD3P69850 94 aa2.1□□□□□ -2.07
UPF3YGR072W GGA1Q06336 557 aa2.1□□□□□ -2.07
UPF3YGR072W YOL024WQ08172 172 aa2.1□□□□□ -2.07
UPF3YGR072W YOR283WQ12040 230 aaKnown RBP2.1□□□□□ -2.07
UPF3YGR072W MCP1Q12106 302 aa2.1□□□□□ -2.07
UPF3YGR072W RIO1Q12196 484 aaKnown RBP2.1□□□□□ -2.07
UPF3YGR072W YFR032C-BQ8TGU2 87 aa2.1□□□□□ -2.07
UPF3YGR072W MBF1O14467 151 aaKnown RBP2.09□□□□□ -2.07
UPF3YGR072W TIM9O74700 87 aa2.09□□□□□ -2.07
UPF3YGR072W SNF4P12904 322 aa2.09□□□□□ -2.07
UPF3YGR072W FBA1P14540 359 aaKnown RBP2.09□□□□□ -2.07
UPF3YGR072W SNF6P18888 332 aa2.09□□□□□ -2.07
UPF3YGR072W TRX3P25372 127 aa2.09□□□□□ -2.07
UPF3YGR072W PEX4P29340 183 aa2.09□□□□□ -2.07
UPF3YGR072W SNC2P33328 115 aa2.09□□□□□ -2.07
UPF3YGR072W YOR062CP36025 268 aa2.09□□□□□ -2.07
UPF3YGR072W MRPL17P36528 281 aa2.09□□□□□ -2.07
UPF3YGR072W ERV15P38312 142 aa2.09□□□□□ -2.07
UPF3YGR072W YER034WP40022 185 aaKnown RBP2.09□□□□□ -2.07
UPF3YGR072W POG1P40473 351 aa2.09□□□□□ -2.07
UPF3YGR072W ICE2P40499 491 aa2.09□□□□□ -2.07
UPF3YGR072W YKE4P40544 346 aa2.09□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 35.5 ms