RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 CCDC175P0C221 793 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 AKAP5P24588 427 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 CLCN1P35523 988 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 ASPAP45381 313 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 GUCY2FP51841 1108 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 ZNF132P52740 706 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 YARSP54577 528 aaKnown RBP12.14□□□□□ -0.47
SNX1-212ENST00000560861 NFX1Q12986 1120 aaKnown RBP12.14□□□□□ -0.47
SNX1-212ENST00000560861 SGSM1Q2NKQ1 1148 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 WDR44Q5JSH3 913 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 TWF2Q6IBS0 349 aaKnown RBP12.14□□□□□ -0.47
SNX1-212ENST00000560861 LRRC8DQ7L1W4 858 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 ZNF598Q86UK7 904 aaKnown RBP12.14□□□□□ -0.47
SNX1-212ENST00000560861 RTN4RL1Q86UN2 441 aaPredicted RBP12.14□□□□□ -0.47
SNX1-212ENST00000560861 FMNL3Q8IVF7 1028 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 GSTCDQ8NEC7 633 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 LNX1Q8TBB1 728 aaPredicted RBP12.14□□□□□ -0.47
SNX1-212ENST00000560861 DIS3LQ8TF46 1054 aaKnown RBP12.14□□□□□ -0.47
SNX1-212ENST00000560861 LINC01599Q8WXQ3 324 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 KIF12Q96FN5 646 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 CCDC42Q96M95 316 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 BCO2Q9BYV7 579 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 NIF3L1Q9GZT8 377 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.14□□□□□ -0.473e-11■■■■■ 99.4
SNX1-212ENST00000560861 TRMT1Q9NXH9 659 aaKnown RBP12.14□□□□□ -0.47
SNX1-212ENST00000560861 NOCTQ9UK39 431 aaKnown RBP12.14□□□□□ -0.47
SNX1-212ENST00000560861 ITGA11Q9UKX5 1188 aa12.14□□□□□ -0.47
SNX1-212ENST00000560861 A0A087X0T9 212 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 A0A0U1RQF3 1178 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 SMIM28A0A1B0GU29 152 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 ANO9A1A5B4 782 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 RCCD1A6NED2 376 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 DDX3XO00571 662 aaKnown RBP eCLIP12.13□□□□□ -0.47
SNX1-212ENST00000560861 INPPL1O15357 1258 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 CCP110O43303 1012 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 ZSCAN12O43309 604 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 NBNO60934 754 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 ITGB3P05106 788 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 FAM228BP0C875 321 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 CHRNB2P17787 502 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 CYP3A5P20815 502 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 TBXAS1P24557 533 aaPredicted RBP12.13□□□□□ -0.47
SNX1-212ENST00000560861 ATICP31939 592 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 RAB27AP51159 221 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 MLLT1Q03111 559 aaPredicted RBP12.13□□□□□ -0.47
SNX1-212ENST00000560861 ARID5AQ03989 594 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 SOX4Q06945 474 aaPredicted RBP12.13□□□□□ -0.47
SNX1-212ENST00000560861 BFSP2Q13515 415 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 NAB2Q15742 525 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 SLC18A3Q16572 532 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 TDRD12Q587J7 1177 aaKnown RBP12.13□□□□□ -0.47
SNX1-212ENST00000560861 AGMOQ6ZNB7 445 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 FAM43BQ6ZT52 329 aaPredicted RBP12.13□□□□□ -0.47
SNX1-212ENST00000560861 EPS8L1Q8TE68 723 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 PPP1R10Q96QC0 940 aaKnown RBP12.13□□□□□ -0.47
SNX1-212ENST00000560861 APOL6Q9BWW8 343 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 TRIM6Q9C030 488 aaPredicted RBP12.13□□□□□ -0.47
SNX1-212ENST00000560861 DPP3Q9NY33 737 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 TUBGCP4Q9UGJ1 667 aa12.13□□□□□ -0.47
SNX1-212ENST00000560861 UBQLN1Q9UMX0 589 aaKnown RBP12.13□□□□□ -0.47
SNX1-212ENST00000560861 TDRD15B5MCY1 1934 aaKnown RBP12.13□□□□□ -0.47
SNX1-212ENST00000560861 ATP8B3O60423 1300 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 TTC3P53804 2025 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 MICAL3Q7RTP6 2002 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 C9IYK1 514 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 PIRO00625 290 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 PPEF2O14830 753 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 PJA2O43164 708 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 ABL1P00519 1130 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 TFRCP02786 760 aaKnown RBP12.12□□□□□ -0.47
SNX1-212ENST00000560861 ITGA4P13612 1032 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 CAPN2P17655 700 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 LRPAP1P30533 357 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 POLR2BP30876 1174 aaKnown RBP12.12□□□□□ -0.47
SNX1-212ENST00000560861 FAM189BP81408 668 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 RBP5P82980 135 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 CYP27A1Q02318 531 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 TLE2Q04725 743 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 FAAP100Q0VG06 881 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 TRPC3Q13507 836 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 TCTN1Q2MV58 587 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 ZNF699Q32M78 642 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 TRIM60Q495X7 471 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 GLRA4Q5JXX5 417 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 NOP9Q86U38 636 aaKnown RBP12.12□□□□□ -0.47
SNX1-212ENST00000560861 DDX1Q92499 740 aaKnown RBP12.12□□□□□ -0.47
SNX1-212ENST00000560861 C18orf25Q96B23 403 aaPredicted RBP12.12□□□□□ -0.47
SNX1-212ENST00000560861 ADAM2Q99965 735 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 SDCBP2Q9H190 292 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 WNT8AQ9H1J5 351 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 RGS18Q9NS28 235 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 KLK14Q9P0G3 267 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 PARP2Q9UGN5 583 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 TBX21Q9UL17 535 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 POLIQ9UNA4 740 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 GIT1Q9Y2X7 761 aa12.12□□□□□ -0.47
SNX1-212ENST00000560861 ALPK3Q96L96 1907 aa12.11□□□□□ -0.47
SNX1-212ENST00000560861 GOLGA6L9A6NEM1 432 aa12.11□□□□□ -0.47
SNX1-212ENST00000560861 TULP1O00294 542 aaPredicted RBP12.11□□□□□ -0.47
SNX1-212ENST00000560861 TLR3O15455 904 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms