RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C POP6P53218 158 aa4.32□□□□□ -1.72
NUP116YMR047C MOT3P54785 490 aaKnown RBP4.32□□□□□ -1.72
NUP116YMR047C ATG33Q06485 197 aa4.32□□□□□ -1.72
NUP116YMR047C SNF8Q12483 233 aa4.32□□□□□ -1.72
NUP116YMR047C DAD2P36162 133 aa4.31□□□□□ -1.72
NUP116YMR047C OM14P38325 134 aa4.31□□□□□ -1.72
NUP116YMR047C COX15P40086 486 aa4.31□□□□□ -1.72
NUP116YMR047C STE24P47154 453 aa4.31□□□□□ -1.72
NUP116YMR047C ERG25P53045 309 aa4.31□□□□□ -1.72
NUP116YMR047C CUZ1P53899 274 aa4.31□□□□□ -1.72
NUP116YMR047C SKO1Q02100 647 aa4.31□□□□□ -1.72
NUP116YMR047C TY1A-DR2Q03964 440 aaKnown RBP4.31□□□□□ -1.72
NUP116YMR047C API2Q04413 109 aa4.31□□□□□ -1.72
NUP116YMR047C RAS2P01120 322 aaKnown RBP4.31□□□□□ -1.72
NUP116YMR047C ZRT3P34240 503 aa4.31□□□□□ -1.72
NUP116YMR047C ECM15P35195 104 aa4.31□□□□□ -1.72
NUP116YMR047C MRPL28P36527 147 aa4.31□□□□□ -1.72
NUP116YMR047C GEP4P38812 185 aa4.31□□□□□ -1.72
NUP116YMR047C SNU13P39990 126 aaKnown RBP4.31□□□□□ -1.72
NUP116YMR047C POG1P40473 351 aa4.31□□□□□ -1.72
NUP116YMR047C HIS6P40545 261 aa4.31□□□□□ -1.72
NUP116YMR047C GPI14P47088 403 aaKnown RBP4.31□□□□□ -1.72
NUP116YMR047C YIP4P53093 235 aa4.31□□□□□ -1.72
NUP116YMR047C VPS28Q02767 242 aa4.31□□□□□ -1.72
NUP116YMR047C UGO1Q03327 502 aa4.31□□□□□ -1.72
NUP116YMR047C LRS4Q04087 347 aaKnown RBP4.31□□□□□ -1.72
NUP116YMR047C HSP31Q04432 237 aa4.31□□□□□ -1.72
NUP116YMR047C OLE1P21147 510 aaKnown RBP4.31□□□□□ -1.72
NUP116YMR047C YMR144WP40214 342 aaKnown RBP4.31□□□□□ -1.72
NUP116YMR047C PHO23P50947 330 aa4.31□□□□□ -1.72
NUP116YMR047C EXG2P52911 562 aa4.31□□□□□ -1.72
NUP116YMR047C TDH2P00358 332 aaKnown RBP4.3□□□□□ -1.72
NUP116YMR047C TDH3P00359 332 aaKnown RBP RIP-Chip data4.3□□□□□ -1.72not detected
NUP116YMR047C HTS1P07263 546 aaKnown RBP4.3□□□□□ -1.72
NUP116YMR047C TY1A-HP0C2I4 478 aaKnown RBP4.3□□□□□ -1.72
NUP116YMR047C YHR214C-DP0CX93 97 aa4.3□□□□□ -1.72
NUP116YMR047C ERS1P17261 260 aa4.3□□□□□ -1.72
NUP116YMR047C GPI12P23797 304 aa4.3□□□□□ -1.72
NUP116YMR047C YHL044WP38727 235 aa4.3□□□□□ -1.72
NUP116YMR047C YHR035WP38769 630 aa4.3□□□□□ -1.72
NUP116YMR047C YEL068CP39977 110 aa4.3□□□□□ -1.72
NUP116YMR047C MPA43P53583 542 aaPredicted RBP4.3□□□□□ -1.72
NUP116YMR047C DAL4Q04895 635 aa4.3□□□□□ -1.72
NUP116YMR047C MED7Q08278 222 aa4.3□□□□□ -1.72
NUP116YMR047C YPL199CQ08954 240 aa4.3□□□□□ -1.72
NUP116YMR047C SRL2Q12020 392 aa4.3□□□□□ -1.72
NUP116YMR047C YDL199CQ12407 687 aa4.3□□□□□ -1.72
NUP116YMR047C RTN2Q12443 393 aa4.3□□□□□ -1.72
NUP116YMR047C PHO80P20052 293 aa4.3□□□□□ -1.72
NUP116YMR047C NFS1P25374 497 aa4.3□□□□□ -1.72
NUP116YMR047C ATG8P38182 117 aaRIP-Chip data4.3□□□□□ -1.72not detected
NUP116YMR047C YBL029WP38201 376 aa4.3□□□□□ -1.72
NUP116YMR047C IKI1P38874 309 aa4.3□□□□□ -1.72
NUP116YMR047C RFC4P40339 323 aaKnown RBP4.3□□□□□ -1.72
NUP116YMR047C DAN1P47178 298 aa4.3□□□□□ -1.72
NUP116YMR047C NUP57P48837 541 aa4.3□□□□□ -1.72
NUP116YMR047C TPC1P53257 314 aa4.3□□□□□ -1.72
NUP116YMR047C MKC7P53379 596 aa4.3□□□□□ -1.72
NUP116YMR047C YDL177CQ12257 170 aa4.3□□□□□ -1.72
NUP116YMR047C YLR108CQ12259 485 aa4.3□□□□□ -1.72
NUP116YMR047C TY1A-NL1Q12391 440 aaKnown RBP4.3□□□□□ -1.72
NUP116YMR047C EAF3Q12432 401 aa4.3□□□□□ -1.72
NUP116YMR047C QCR7P00128 127 aa4.29□□□□□ -1.72
NUP116YMR047C QCR2P07257 368 aa4.29□□□□□ -1.72
NUP116YMR047C POF1P25576 258 aa4.29□□□□□ -1.72
NUP116YMR047C TIR2P33890 251 aa4.29□□□□□ -1.72
NUP116YMR047C MDM31P38880 579 aa4.29□□□□□ -1.72
NUP116YMR047C MRX8Q05473 314 aa4.29□□□□□ -1.72
NUP116YMR047C TRM10Q12400 293 aa4.29□□□□□ -1.72
NUP116YMR047C RIB3Q99258 208 aa4.29□□□□□ -1.72
NUP116YMR047C MDH1P17505 334 aaKnown RBP RIP-Chip data4.29□□□□□ -1.72not detected
NUP116YMR047C FEN2P25621 512 aaKnown RBP4.29□□□□□ -1.72
NUP116YMR047C IDH2P28241 369 aaKnown RBP4.29□□□□□ -1.72
NUP116YMR047C YEF1P32622 495 aa4.29□□□□□ -1.72
NUP116YMR047C AUR1P36107 401 aaPredicted RBP4.29□□□□□ -1.72
NUP116YMR047C DER1P38307 211 aa4.29□□□□□ -1.72
NUP116YMR047C YPT31P38555 223 aaKnown RBP4.29□□□□□ -1.72
NUP116YMR047C PHO90P39535 881 aa4.29□□□□□ -1.72
NUP116YMR047C OXA1P39952 402 aa4.29□□□□□ -1.72
NUP116YMR047C PCP1P53259 346 aa4.29□□□□□ -1.72
NUP116YMR047C YGR151CP53287 111 aa4.29□□□□□ -1.72
NUP116YMR047C AAH1P53909 347 aa4.29□□□□□ -1.72
NUP116YMR047C YDR415CQ04033 374 aaPredicted RBP4.29□□□□□ -1.72
NUP116YMR047C MRPL1Q04599 285 aa4.29□□□□□ -1.72
NUP116YMR047C NAT5Q08689 176 aa4.29□□□□□ -1.72
NUP116YMR047C RRG7Q08774 242 aaPredicted RBP4.29□□□□□ -1.72
NUP116YMR047C NIP7Q08962 181 aaKnown RBP4.29□□□□□ -1.72
NUP116YMR047C GLT1Q12680 2145 aaKnown RBP4.29□□□□□ -1.72
NUP116YMR047C CDC4P07834 779 aa4.29□□□□□ -1.72
NUP116YMR047C CUP2P15315 225 aa4.29□□□□□ -1.72
NUP116YMR047C PET18P25362 215 aa4.29□□□□□ -1.72
NUP116YMR047C TRS65P32893 560 aa4.29□□□□□ -1.72
NUP116YMR047C YGP1P38616 354 aaKnown RBP4.29□□□□□ -1.72
NUP116YMR047C SHU2P38957 223 aa4.29□□□□□ -1.72
NUP116YMR047C COS10P52924 374 aa4.29□□□□□ -1.72
NUP116YMR047C YPL039WQ03080 316 aa4.29□□□□□ -1.72
NUP116YMR047C YLR126CQ12288 251 aa4.29□□□□□ -1.72
NUP116YMR047C YBL112CQ3E7Y4 105 aa4.29□□□□□ -1.72
NUP116YMR047C TPK3P05986 398 aa4.28□□□□□ -1.72
NUP116YMR047C CKS1P20486 150 aaKnown RBP4.28□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 94.3 ms