RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	SRY1	P36007	326 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	LNP1	P38878	278 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	YIR035C	P40579	254 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	YJR111C	P47148	283 aa	Known RBP	5.26	□□□□□ -1.57
RPT3	YDR394W	BUL1	P48524	976 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	UBP8	P50102	471 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	NSA1	P53136	463 aa	Predicted RBP	5.26	□□□□□ -1.57
RPT3	YDR394W	YNR048W	P53740	393 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	ODC1	Q03028	310 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	TRS23	Q03784	219 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	USB1	Q12208	290 aa	Known RBP	5.26	□□□□□ -1.57
RPT3	YDR394W	YCT1	Q12235	531 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	ERP4	Q12450	207 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	YJR112W-A	Q3E743	109 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	UBA3	Q99344	299 aa		5.26	□□□□□ -1.57
RPT3	YDR394W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	5.25	□□□□□ -1.57	not detected
RPT3	YDR394W	TDH1	P00360	332 aa	Known RBP	5.25	□□□□□ -1.57
RPT3	YDR394W	YFR010W-A	P0C5N0	62 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	UBI4	P0CG63	381 aa	Known RBP	5.25	□□□□□ -1.57
RPT3	YDR394W	RPL40A	P0CH08	128 aa	Known RBP	5.25	□□□□□ -1.57
RPT3	YDR394W	RPL40B	P0CH09	128 aa	Known RBP	5.25	□□□□□ -1.57
RPT3	YDR394W	ZRC1	P20107	442 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	MDH2	P22133	377 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	MIR1	P23641	311 aa	Known RBP	5.25	□□□□□ -1.57
RPT3	YDR394W	TIP1	P27654	210 aa	Predicted RBP	5.25	□□□□□ -1.57
RPT3	YDR394W	SOF1	P33750	489 aa	Known RBP	5.25	□□□□□ -1.57
RPT3	YDR394W	YBR184W	P38299	523 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	OM14	P38325	134 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	UME6	P39001	836 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	YJL016W	P47072	561 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	YJR011C	P47086	261 aa	Predicted RBP	5.25	□□□□□ -1.57
RPT3	YDR394W	SNN1	P48232	102 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	UFD1	P53044	361 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	MIX14	Q04341	121 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	BER1	Q06688	274 aa	Known RBP	5.25	□□□□□ -1.57
RPT3	YDR394W	ATP16	Q12165	160 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	MED4	Q12343	284 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	LAS17	Q12446	633 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	YLR146W-A	Q2V2P1	62 aa		5.25	□□□□□ -1.57
RPT3	YDR394W	COX5B	P00425	151 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	CDC28	P00546	298 aa	Known RBP	5.24	□□□□□ -1.57
RPT3	YDR394W	SPS4	P09937	338 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	PEX4	P29340	183 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	FAT1	P38225	669 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	UBS1	P38290	277 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	SHG1	P38337	142 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	GPP1	P41277	250 aa	Known RBP	5.24	□□□□□ -1.57
RPT3	YDR394W	ECO1	P43605	281 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	GWT1	P47026	490 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	YHC3	P47040	408 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	HAM1	P47119	197 aa	Known RBP	5.24	□□□□□ -1.57
RPT3	YDR394W	YGL117W	P53133	265 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	MRPL19	P53875	158 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	GPI15	P53961	229 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	NRG1	Q03125	231 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	NUP53	Q03790	475 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	THI74	Q04083	370 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	YDL086W	Q07505	273 aa		5.24	□□□□□ -1.57
RPT3	YDR394W	SDO1	Q07953	250 aa	Known RBP	5.24	□□□□□ -1.57
RPT3	YDR394W	FLO9	P39712	1322 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	RPS16A	P0CX51	143 aa	Known RBP	5.23	□□□□□ -1.57
RPT3	YDR394W	RPS16B	P0CX52	143 aa	Known RBP	5.23	□□□□□ -1.57
RPT3	YDR394W	MRP2	P10663	115 aa	Predicted RBP	5.23	□□□□□ -1.57
RPT3	YDR394W	PCL1	P24867	279 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	SED4	P25365	1065 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	YCR101C	P25607	182 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	AGA2	P32781	87 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	GPI16	P38875	610 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	YND1	P40009	630 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	XBP1	P40489	647 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	YIL024C	P40543	189 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	YCL001W-A	P87012	153 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	EST3	Q03096	181 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	ERP1	Q05359	219 aa	Known RBP	5.23	□□□□□ -1.57
RPT3	YDR394W	RRT7	Q07829	113 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	RFU1	Q08003	200 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	FCF2	Q12035	217 aa	Predicted RBP	5.23	□□□□□ -1.57
RPT3	YDR394W	IZH2	Q12442	317 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	VMA9	Q3E7B6	73 aa		5.23	□□□□□ -1.57
RPT3	YDR394W	FAS1	P07149	2051 aa	Known RBP	5.23	□□□□□ -1.57
RPT3	YDR394W	ADE8	P04161	214 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	CBP6	P07253	162 aa	Predicted RBP	5.22	□□□□□ -1.57
RPT3	YDR394W	OLE1	P21147	510 aa	Known RBP	5.22	□□□□□ -1.57
RPT3	YDR394W	YKL162C	P36052	402 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	AGX1	P43567	385 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	ADO1	P47143	340 aa	Known RBP	5.22	□□□□□ -1.57
RPT3	YDR394W	PKP2	P53170	491 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	HOL1	P53389	586 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	APJ1	P53940	528 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	YDR209C	Q03480	137 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	YDR286C	Q05530	114 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	HUT1	Q12520	339 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	YLR365W	Q7LIF2	110 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	HBN1	Q96VH4	193 aa		5.22	□□□□□ -1.57
RPT3	YDR394W	TOR2	P32600	2474 aa	Known RBP	5.21	□□□□□ -1.57
RPT3	YDR394W	CKA1	P15790	372 aa		5.21	□□□□□ -1.58
RPT3	YDR394W	DEG1	P31115	442 aa	Known RBP	5.21	□□□□□ -1.58
RPT3	YDR394W	OCH1	P31755	480 aa		5.21	□□□□□ -1.58
RPT3	YDR394W	GLC7	P32598	312 aa	Known RBP	5.21	□□□□□ -1.58
RPT3	YDR394W	REC114	P32841	428 aa		5.21	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 23.5 ms