RNA–Protein interactions for RNA: ENST00000532935.5

CPSF1-210, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-210ENST00000532935 HPS3Q969F9 1004 aa16.73■□□□□ 0.27
CPSF1-210ENST00000532935 KIF12Q96FN5 646 aa16.73■□□□□ 0.27
CPSF1-210ENST00000532935 POP1Q99575 1024 aaKnown RBP16.73■□□□□ 0.27
CPSF1-210ENST00000532935 TUBGCP4Q9UGJ1 667 aa16.73■□□□□ 0.27
CPSF1-210ENST00000532935 A0A1B0GVL5 298 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 C19orf67A6NJJ6 358 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 TRAPPC3O43617 180 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 PRPF6O94906 941 aaKnown RBP16.72■□□□□ 0.27
CPSF1-210ENST00000532935 GLUD1P00367 558 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 RPL17P18621 184 aaKnown RBP16.72■□□□□ 0.27
CPSF1-210ENST00000532935 FGFR3P22607 806 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 CASP1P29466 404 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 ADSSP30520 456 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 BRCC3P46736 316 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 ACOT2P49753 483 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 NUCB2P80303 420 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 ITIH3Q06033 890 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 ZBTB6Q15916 424 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 PSMD5Q16401 504 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 RARS2Q5T160 578 aaKnown RBP16.72■□□□□ 0.27
CPSF1-210ENST00000532935 CES5AQ6NT32 575 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 STXBP4Q6ZWJ1 553 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 GLYCTKQ8IVS8 523 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 CD302Q8IX05 232 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 SYCP3Q8IZU3 236 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 LNX1Q8TBB1 728 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-210ENST00000532935 TSPAN18Q96SJ8 248 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 ADAM7Q9H2U9 754 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 SERTAD1Q9UHV2 236 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-210ENST00000532935 TRIOO75962 3097 aa16.72■□□□□ 0.27
CPSF1-210ENST00000532935 SCN1AP35498 2009 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 I3L4J1 428 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 ACTN4O43707 911 aaKnown RBP16.71■□□□□ 0.27
CPSF1-210ENST00000532935 SLFN14P0C7P3 912 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 AFMP43652 599 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 CBX2Q14781 532 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-210ENST00000532935 KANK3Q6NY19 840 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 PDXDC1Q6P996 788 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 UNC13DQ70J99 1090 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 PALB2Q86YC2 1186 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 GRAMD1CQ8IYS0 662 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 GLIS3Q8NEA6 775 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 FAM212AQ96EL1 285 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 PHF7Q9BWX1 381 aaPredicted RBP16.71■□□□□ 0.27
CPSF1-210ENST00000532935 BLZF1Q9H2G9 400 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 TMEM206Q9H813 350 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 SFXN1Q9H9B4 322 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 MAN1C1Q9NR34 630 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 CDH22Q9UJ99 828 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 UBQLN1Q9UMX0 589 aaKnown RBP16.71■□□□□ 0.27
CPSF1-210ENST00000532935 HPSEQ9Y251 543 aa16.71■□□□□ 0.27
CPSF1-210ENST00000532935 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-210ENST00000532935 FAM237AA0A1B0GTK4 181 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 SPDYE4A6NLX3 237 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 XPOTO43592 962 aaKnown RBP16.7■□□□□ 0.26
CPSF1-210ENST00000532935 C1RP00736 705 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 CYP3A5P20815 502 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 GARTP22102 1010 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 TKTP29401 623 aaKnown RBP16.7■□□□□ 0.26
CPSF1-210ENST00000532935 LRPAP1P30533 357 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 CUL4BQ13620 913 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 FAM26FQ5R3K3 315 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 JADE1Q6IE81 842 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 CRELD2Q6UXH1 353 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-210ENST00000532935 TMEM130Q8N3G9 435 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 NECTIN4Q96NY8 510 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 CLSTN3Q9BQT9 956 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 GDPD2Q9HCC8 539 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 DPP7Q9UHL4 492 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 USP25Q9UHP3 1055 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 NUB1Q9Y5A7 615 aa16.7■□□□□ 0.26
CPSF1-210ENST00000532935 PVALEFA0A1B0GWK0 134 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 EIF3DO15371 548 aaKnown RBP eCLIP16.69■□□□□ 0.26
CPSF1-210ENST00000532935 TGM5O43548 720 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 WEE2P0C1S8 567 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 SPATA31D3P0C874 917 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 MTHFRP42898 656 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 GUCY2FP51841 1108 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 NDUFA8P51970 172 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 POU5F1Q01860 360 aaKnown RBP16.69■□□□□ 0.26
CPSF1-210ENST00000532935 EHHADHQ08426 723 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 LILRA6Q6PI73 481 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 ELMSAN1Q6PJG2 1045 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 TMC5Q6UXY8 1006 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 SPATA31D4Q6ZUB0 917 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 EPM2AIP1Q7L775 607 aaPredicted RBP16.69■□□□□ 0.26
CPSF1-210ENST00000532935 HDAC7Q8WUI4 952 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 KHSRPQ92945 711 aaKnown RBP eCLIP16.69■□□□□ 0.26
CPSF1-210ENST00000532935 PAGE5Q96GU1 130 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 RIPOR3Q96MK2 946 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 FAM213AQ9BRX8 229 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 ASB7Q9H672 318 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 MTRRQ9UBK8 725 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 DERAQ9Y315 318 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 DOCK6Q96HP0 2047 aa16.69■□□□□ 0.26
CPSF1-210ENST00000532935 A0A1W2PQ27 194 aa16.68■□□□□ 0.26
CPSF1-210ENST00000532935 A0A1W2PQ64 194 aa16.68■□□□□ 0.26
CPSF1-210ENST00000532935 A0A1W2PQD8 194 aa16.68■□□□□ 0.26
CPSF1-210ENST00000532935 LOC730098B7Z3J9 87 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms