RNA–Protein interactions for RNA: snR54

snR54, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR54, Length 86 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR54	snR54	RPL13A	Q12690	199 aa	Predicted RBP	0.73	□□□□□ -2.29
snR54	snR54	ACC1	Q00955	2233 aa	Known RBP	0.72	□□□□□ -2.29
snR54	snR54	PET9	P18239	318 aa	Known RBP	0.72	□□□□□ -2.29
snR54	snR54	VPS3	P23643	1011 aa		0.72	□□□□□ -2.29
snR54	snR54	UPS2	P35200	230 aa		0.72	□□□□□ -2.29
snR54	snR54	JEN1	P36035	616 aa		0.72	□□□□□ -2.29
snR54	snR54	MRX3	P38172	270 aa		0.72	□□□□□ -2.29
snR54	snR54	SMB1	P40018	196 aa	Known RBP	0.72	□□□□□ -2.29
snR54	snR54	ATG39	Q06159	398 aa		0.72	□□□□□ -2.29
snR54	snR54	SSA3	P09435	649 aa	Known RBP	0.71	□□□□□ -2.3
snR54	snR54	YBR096W	P38256	230 aa		0.71	□□□□□ -2.3
snR54	snR54	FIS1	P40515	155 aa		0.71	□□□□□ -2.3
snR54	snR54	YJR079W	P47126	109 aa		0.71	□□□□□ -2.3
snR54	snR54	KAP114	P53067	1004 aa		0.71	□□□□□ -2.3
snR54	snR54	YPR172W	Q06608	200 aa		0.71	□□□□□ -2.3
snR54	snR54	HEM25	Q07534	307 aa		0.71	□□□□□ -2.3
snR54	snR54	YOR186W	Q08560	144 aa		0.71	□□□□□ -2.3
snR54	snR54	SNA3	P14359	133 aa		0.7	□□□□□ -2.3
snR54	snR54	YPT52	P36018	234 aa	Known RBP	0.7	□□□□□ -2.3
snR54	snR54	PRS2	P38620	318 aa	Known RBP	0.7	□□□□□ -2.3
snR54	snR54	GOS1	P38736	223 aa		0.7	□□□□□ -2.3
snR54	snR54	THO1	P40040	218 aa	Known RBP	0.7	□□□□□ -2.3
snR54	snR54	YIL001W	P40560	513 aa		0.7	□□□□□ -2.3
snR54	snR54	JHD2	P47156	728 aa	Predicted RBP	0.7	□□□□□ -2.3
snR54	snR54	SNZ2	P53824	298 aa		0.7	□□□□□ -2.3
snR54	snR54	SPG4	Q04438	115 aa		0.7	□□□□□ -2.3
snR54	snR54	RIO1	Q12196	484 aa	Known RBP	0.7	□□□□□ -2.3
snR54	snR54	YIL002W-A	Q3E7Z5	69 aa		0.7	□□□□□ -2.3
snR54	snR54	COX2	P00410	251 aa		0.69	□□□□□ -2.3
snR54	snR54	TCD1	P38756	429 aa		0.69	□□□□□ -2.3
snR54	snR54	SVP26	P38869	228 aa		0.69	□□□□□ -2.3
snR54	snR54	TOS8	P53147	276 aa		0.69	□□□□□ -2.3
snR54	snR54	ERV29	P53337	310 aa		0.69	□□□□□ -2.3
snR54	snR54	COX20	Q04935	205 aa		0.69	□□□□□ -2.3
snR54	snR54	YPR098C	Q06089	161 aa		0.69	□□□□□ -2.3
snR54	snR54	YPL257W	Q08974	193 aa		0.69	□□□□□ -2.3
snR54	snR54	GPA2	P10823	449 aa		0.68	□□□□□ -2.3
snR54	snR54	MRPL39	P36533	70 aa		0.68	□□□□□ -2.3
snR54	snR54	RMR1	P53060	241 aa		0.68	□□□□□ -2.3
snR54	snR54	EGD1	Q02642	157 aa	Known RBP	0.68	□□□□□ -2.3
snR54	snR54	HOM6	P31116	359 aa	Known RBP	0.67	□□□□□ -2.3
snR54	snR54	SGE1	P33335	543 aa		0.67	□□□□□ -2.3
snR54	snR54	YAR068W	P39564	161 aa		0.67	□□□□□ -2.3
snR54	snR54	RPL33B	P41056	107 aa	Known RBP	0.67	□□□□□ -2.3
snR54	snR54	RPA43	P46669	326 aa		0.67	□□□□□ -2.3
snR54	snR54	GLG2	P47011	380 aa		0.67	□□□□□ -2.3
snR54	snR54	ALG11	P53954	548 aa	Known RBP	0.67	□□□□□ -2.3
snR54	snR54	YNL046W	P53956	172 aa		0.67	□□□□□ -2.3
snR54	snR54	NIP7	Q08962	181 aa	Known RBP	0.67	□□□□□ -2.3
snR54	snR54	SLH1	P53327	1967 aa	Known RBP	0.66	□□□□□ -2.3
snR54	snR54	IPP1	P00817	287 aa	Known RBP	0.66	□□□□□ -2.3
snR54	snR54	QCR8	P08525	94 aa		0.66	□□□□□ -2.3
snR54	snR54	MRP1	P10662	321 aa	Known RBP	0.66	□□□□□ -2.3
snR54	snR54	DAL80	P26343	269 aa		0.66	□□□□□ -2.3
snR54	snR54	MPA43	P53583	542 aa	Predicted RBP	0.66	□□□□□ -2.3
snR54	snR54	MSA1	Q08471	629 aa		0.66	□□□□□ -2.3
snR54	snR54	RRS1	Q08746	203 aa	Known RBP	0.66	□□□□□ -2.3
snR54	snR54	VAR1	P02381	398 aa		0.65	□□□□□ -2.31
snR54	snR54	ECM33	P38248	429 aa	Known RBP	0.65	□□□□□ -2.31
snR54	snR54	YJR056C	P47115	236 aa		0.65	□□□□□ -2.31
snR54	snR54	RPL37A	P49166	88 aa	Known RBP	0.65	□□□□□ -2.31
snR54	snR54	BOL2	P53082	120 aa		0.65	□□□□□ -2.31
snR54	snR54	YDR209C	Q03480	137 aa		0.65	□□□□□ -2.31
snR54	snR54	ADH6	Q04894	360 aa	Known RBP	0.65	□□□□□ -2.31
snR54	snR54	YPL229W	Q99395	206 aa		0.65	□□□□□ -2.31
snR54	snR54	HTL1	Q9URQ5	78 aa		0.65	□□□□□ -2.31
snR54	snR54	CPA1	P07258	411 aa	Known RBP	0.64	□□□□□ -2.31
snR54	snR54	RPS5	P26783	225 aa	Known RBP	0.64	□□□□□ -2.31
snR54	snR54	RPF1	P38805	295 aa	Known RBP	0.64	□□□□□ -2.31
snR54	snR54	TIR3	P40552	269 aa		0.64	□□□□□ -2.31
snR54	snR54	USE1	P53146	245 aa		0.64	□□□□□ -2.31
snR54	snR54	ERV25	P54837	211 aa	Known RBP	0.64	□□□□□ -2.31
snR54	snR54	RHO3	Q00245	231 aa	Known RBP	0.64	□□□□□ -2.31
snR54	snR54	SPG3	Q04398	127 aa	Predicted RBP	0.64	□□□□□ -2.31
snR54	snR54	TPO4	Q12256	659 aa		0.64	□□□□□ -2.31
snR54	snR54	RSR1	P13856	272 aa		0.63	□□□□□ -2.31
snR54	snR54	POL30	P15873	258 aa	Known RBP	0.63	□□□□□ -2.31
snR54	snR54	FCY2	P17064	533 aa		0.63	□□□□□ -2.31
snR54	snR54	FZF1	P32805	299 aa		0.63	□□□□□ -2.31
snR54	snR54	YAR1	P46683	200 aa		0.63	□□□□□ -2.31
snR54	snR54	EMC2	P47133	292 aa	Known RBP	0.63	□□□□□ -2.31
snR54	snR54	YCT1	Q12235	531 aa		0.63	□□□□□ -2.31
snR54	snR54	MEI4	P29467	408 aa		0.62	□□□□□ -2.31
snR54	snR54	YHR139C-A	O13536	103 aa		0.61	□□□□□ -2.31
snR54	snR54	CDC8	P00572	216 aa		0.61	□□□□□ -2.31
snR54	snR54	RPL27B	P0C2H7	136 aa	Known RBP	0.61	□□□□□ -2.31
snR54	snR54	ERD2	P18414	219 aa		0.61	□□□□□ -2.31
snR54	snR54	DAL82	P21705	255 aa		0.61	□□□□□ -2.31
snR54	snR54	MRPL37	P36532	105 aa		0.61	□□□□□ -2.31
snR54	snR54	MEP1	P40260	492 aa		0.61	□□□□□ -2.31
snR54	snR54	CAT5	P41735	233 aa		0.61	□□□□□ -2.31
snR54	snR54	UBC7	Q02159	165 aa		0.61	□□□□□ -2.31
snR54	snR54	TRM12	Q04235	462 aa		0.61	□□□□□ -2.31
snR54	snR54	YOR020W-A	Q3E824	90 aa		0.61	□□□□□ -2.31
snR54	snR54	RPL24A	P04449	155 aa	Known RBP	0.6	□□□□□ -2.31
snR54	snR54	RNA15	P25299	296 aa	Predicted RBP	0.6	□□□□□ -2.31
snR54	snR54	BIG1	P38813	335 aa		0.6	□□□□□ -2.31
snR54	snR54	YHR127W	P38833	243 aa	Known RBP	0.6	□□□□□ -2.31
snR54	snR54	BFR1	P38934	470 aa	Known RBP RIP-Chip data	0.6	□□□□□ -2.31	not detected
snR54	snR54	YER076C	P40049	302 aa		0.6	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 30.4 ms