RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Gm8298J3QPI0 401 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Abcb1bP06795 1276 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Bcat1P24288 386 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Stmn1P54227 149 aaKnown RBP16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Mark3Q03141 753 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Pfdn6Q03958 127 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tdpoz2Q717B2 364 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Cwf19l2Q8BG79 887 aaKnown RBP16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Znrd1-asQ8R0E5 213 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tbc1d19Q8VDV7 526 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 ToporslQ9D2F8 683 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 LrmdaQ9D9B4 229 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Irx5Q9JKQ4 484 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Apba1B2RUJ5 842 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gm3371F7CQW8 167 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 GclmO09172 274 aaKnown RBP16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Pbx1P41778 430 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Trim71Q1PSW8 855 aaKnown RBP16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Dusp4Q8BFV3 398 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Abi1Q8CBW3 481 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ap3m2Q8R2R9 418 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Snf8Q9CZ28 258 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Nde1Q9CZA6 344 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Veph1A1A535 833 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Zfp953Q3UPV7 304 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 BcrQ6PAJ1 1270 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 1700013H16RikQ9DAC5 291 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Casq2O09161 415 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Erbb2P70424 1256 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ckap2lQ7TS74 745 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Fam160b1Q8CDM8 764 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Col23a1Q8K4G2 532 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tfr2Q9JKX3 798 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 SufuQ9Z0P7 484 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 NxnP97346 435 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Slc20a2Q80UP8 656 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Lrrc15Q80X72 579 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Cabcoco1Q8CDT7 208 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Hip1Q8VD75 1029 aaKnown RBP16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 TarsQ9D0R2 722 aaKnown RBP16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Oog1E9Q5G7 496 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Nrg3O35181 713 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Actr2P61161 394 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Etv6P97360 485 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Fam102aQ78T81 392 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Olfr395Q8VGR3 312 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Rpap3Q9D706 660 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Vmn2r121A2BE32 847 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Asprv1Q09PK2 339 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gm11437Q5QR91 290 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Lrig3Q6P1C6 1117 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Fkbp6Q91XW8 327 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Atp13a1Q9EPE9 1200 aaKnown RBP16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Stk4Q9JI11 487 aa16.43■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gja5Q01231 358 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 UrgcpQ5NCI0 926 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Q6DFW0 481 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Mtrf1lQ8BJU9 373 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tmem132cQ8CEF9 1099 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Pidd1Q9ERV7 915 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Nav1Q8CH77 1875 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Mocs3A2BDX3 460 aaKnown RBP16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Cyth3O08967 399 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 MafgO54790 162 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Nptx2O70340 429 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Syt2P46097 422 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gucy2eP52785 1108 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Arl4cP61208 192 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ddx3xQ62167 662 aaKnown RBP16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Znf579Q80VM4 562 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Rassf9Q8K342 435 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ccdc65Q8VHI7 493 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Fam205aA2APU8 1308 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Pnpla6Q3TRM4 1355 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Rbp3P49194 1234 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Zcchc2Q69ZB8 1166 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Prkag2Q91WG5 566 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Nr1h3Q9Z0Y9 445 aa16.42■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Fam81bA0A140LI28 432 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tgfb2P27090 414 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Arpp19P56212 112 aaKnown RBP16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 EsrrgP62509 458 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Q80Y73 168 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Setd6Q9CWY3 473 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Mrpl2Q9D773 306 aaKnown RBP16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tlr5Q9JLF7 859 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Erich2E9Q1A6 463 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 SftpdP50404 374 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 GmncQ3URY2 333 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Mettl25Q6NXH8 597 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Q8BGD0 127 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tmem120aQ8C1E7 343 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Rabl3Q9D4V7 236 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Cyp39a1Q9JKJ9 470 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Rtl9Q32KG4 1339 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gm5737A0A140LI11 423 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Apol7bB1AQP7 369 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Mms22lB1AUR6 1238 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 6030498E09RikB1AX85 169 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Apba3O88888 571 aa16.41■□□□□ 0.22
Retrieved 100 of 22,080 RNA–protein pairs in 17.5 ms