Protein–RNA interactions for Protein: Q9Z0Y9

Nr1h3, Oxysterols receptor LXR-alpha, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h3Q9Z0Y9 Gm25239-201ENSMUST00000174915 86 ntBASIC42.01■■■■■ 4.32
Nr1h3Q9Z0Y9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
Nr1h3Q9Z0Y9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
Nr1h3Q9Z0Y9 Gm15042-201ENSMUST00000120212 883 ntBASIC36.6■■■■□ 3.45
Nr1h3Q9Z0Y9 Gm24109-201ENSMUST00000175489 103 ntBASIC36.44■■■■□ 3.42
Nr1h3Q9Z0Y9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
Nr1h3Q9Z0Y9 Gm15045-201ENSMUST00000117359 883 ntBASIC35.71■■■■□ 3.31
Nr1h3Q9Z0Y9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
Nr1h3Q9Z0Y9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.49■■■■□ 3.27
Nr1h3Q9Z0Y9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
Nr1h3Q9Z0Y9 Gm23366-201ENSMUST00000175022 89 ntBASIC35.14■■■■□ 3.22
Nr1h3Q9Z0Y9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
Nr1h3Q9Z0Y9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
Nr1h3Q9Z0Y9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC34.61■■■■□ 3.13
Nr1h3Q9Z0Y9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
Nr1h3Q9Z0Y9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.05■■■■□ 3.04
Nr1h3Q9Z0Y9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.87■■■■□ 3.01
Nr1h3Q9Z0Y9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.75■■■□□ 2.99
Nr1h3Q9Z0Y9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.74■■■□□ 2.99
Nr1h3Q9Z0Y9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
Nr1h3Q9Z0Y9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.56■■■□□ 2.96
Nr1h3Q9Z0Y9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
Nr1h3Q9Z0Y9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.44■■■□□ 2.94
Nr1h3Q9Z0Y9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
Nr1h3Q9Z0Y9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Nr1h3Q9Z0Y9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
Nr1h3Q9Z0Y9 Psd-208ENSMUST00000224556 2034 ntBASIC33.3■■■□□ 2.92
Nr1h3Q9Z0Y9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.3■■■□□ 2.92
Nr1h3Q9Z0Y9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Nr1h3Q9Z0Y9 Gm25238-201ENSMUST00000174914 89 ntBASIC33.19■■■□□ 2.9
Nr1h3Q9Z0Y9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
Nr1h3Q9Z0Y9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.02■■■□□ 2.88
Nr1h3Q9Z0Y9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.96■■■□□ 2.87
Nr1h3Q9Z0Y9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.8■■■□□ 2.84
Nr1h3Q9Z0Y9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
Nr1h3Q9Z0Y9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.74■■■□□ 2.83
Nr1h3Q9Z0Y9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.61■■■□□ 2.81
Nr1h3Q9Z0Y9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.4■■■□□ 2.78
Nr1h3Q9Z0Y9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
Nr1h3Q9Z0Y9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
Nr1h3Q9Z0Y9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.34■■■□□ 2.77
Nr1h3Q9Z0Y9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.25■■■□□ 2.75
Nr1h3Q9Z0Y9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.23■■■□□ 2.75
Nr1h3Q9Z0Y9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC32.16■■■□□ 2.74
Nr1h3Q9Z0Y9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Nr1h3Q9Z0Y9 Gm27325-201ENSMUST00000175467 74 ntBASIC32.05■■■□□ 2.72
Nr1h3Q9Z0Y9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Nr1h3Q9Z0Y9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.01■■■□□ 2.71
Nr1h3Q9Z0Y9 Gm25262-201ENSMUST00000174934 133 ntBASIC31.96■■■□□ 2.71
Nr1h3Q9Z0Y9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Nr1h3Q9Z0Y9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Nr1h3Q9Z0Y9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Nr1h3Q9Z0Y9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
Nr1h3Q9Z0Y9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Nr1h3Q9Z0Y9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Nr1h3Q9Z0Y9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.61■■■□□ 2.65
Nr1h3Q9Z0Y9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Nr1h3Q9Z0Y9 Rab21-202ENSMUST00000218831 843 ntBASIC31.59■■■□□ 2.65
Nr1h3Q9Z0Y9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.52■■■□□ 2.64
Nr1h3Q9Z0Y9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.5■■■□□ 2.63
Nr1h3Q9Z0Y9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.46■■■□□ 2.63
Nr1h3Q9Z0Y9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Nr1h3Q9Z0Y9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Nr1h3Q9Z0Y9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.34■■■□□ 2.61
Nr1h3Q9Z0Y9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.27■■■□□ 2.6
Nr1h3Q9Z0Y9 Gm26115-201ENSMUST00000175605 87 ntBASIC31.22■■■□□ 2.59
Nr1h3Q9Z0Y9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Nr1h3Q9Z0Y9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.2■■■□□ 2.58
Nr1h3Q9Z0Y9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
Nr1h3Q9Z0Y9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
Nr1h3Q9Z0Y9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Nr1h3Q9Z0Y9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
Nr1h3Q9Z0Y9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC31.07■■■□□ 2.57
Nr1h3Q9Z0Y9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.07■■■□□ 2.56
Nr1h3Q9Z0Y9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Nr1h3Q9Z0Y9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Nr1h3Q9Z0Y9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.03■■■□□ 2.56
Nr1h3Q9Z0Y9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
Nr1h3Q9Z0Y9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Nr1h3Q9Z0Y9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Nr1h3Q9Z0Y9 Gm8109-201ENSMUST00000194076 746 ntBASIC30.96■■■□□ 2.55
Nr1h3Q9Z0Y9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
Nr1h3Q9Z0Y9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.92■■■□□ 2.54
Nr1h3Q9Z0Y9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Nr1h3Q9Z0Y9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Nr1h3Q9Z0Y9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
Nr1h3Q9Z0Y9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.84■■■□□ 2.53
Nr1h3Q9Z0Y9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
Nr1h3Q9Z0Y9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
Nr1h3Q9Z0Y9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
Nr1h3Q9Z0Y9 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
Nr1h3Q9Z0Y9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Nr1h3Q9Z0Y9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
Nr1h3Q9Z0Y9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.63■■■□□ 2.49
Nr1h3Q9Z0Y9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Nr1h3Q9Z0Y9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.58■■■□□ 2.49
Nr1h3Q9Z0Y9 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.58■■■□□ 2.49
Nr1h3Q9Z0Y9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Nr1h3Q9Z0Y9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Nr1h3Q9Z0Y9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms