RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	STE50	P25344	346 aa		4.38	□□□□□ -1.71
NUP116	YMR047C	PRE4	P30657	266 aa		4.38	□□□□□ -1.71
NUP116	YMR047C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.38	□□□□□ -1.71	not detected
NUP116	YMR047C	HIS7	P33734	552 aa	Known RBP	4.38	□□□□□ -1.71
NUP116	YMR047C	YGL159W	P53110	370 aa		4.38	□□□□□ -1.71
NUP116	YMR047C	GAL83	Q04739	417 aa		4.38	□□□□□ -1.71
NUP116	YMR047C	ATG39	Q06159	398 aa		4.38	□□□□□ -1.71
NUP116	YMR047C	BSC1	Q12140	328 aa		4.38	□□□□□ -1.71
NUP116	YMR047C	ADK1	P07170	222 aa	Known RBP	4.37	□□□□□ -1.71
NUP116	YMR047C	UGA1	P17649	471 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	BOS1	P25385	244 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	COQ2	P32378	372 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	YBR096W	P38256	230 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	KRE29	P40026	464 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	ERG28	P40030	148 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	BAP3	P41815	604 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	YNL181W	P53878	407 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	GAS2	Q06135	555 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	RAD28	Q12021	506 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	RPF1	P38805	295 aa	Known RBP	4.37	□□□□□ -1.71
NUP116	YMR047C	YGL260W	P53056	76 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	CRZ1	P53968	678 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	DAD3	P69850	94 aa		4.37	□□□□□ -1.71
NUP116	YMR047C	MRPL23	Q12487	163 aa	Predicted RBP	4.37	□□□□□ -1.71
NUP116	YMR047C	SPS2	P08459	502 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	ART10	P18634	518 aa	Known RBP	4.36	□□□□□ -1.71
NUP116	YMR047C	NGG1	P32494	702 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	ISC10	P32645	267 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	LYS12	P40495	371 aa	Known RBP	4.36	□□□□□ -1.71
NUP116	YMR047C	SMK1	P41808	388 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	SER2	P42941	309 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	RPA43	P46669	326 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	YDR366C	P87287	132 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	ATG21	Q02887	496 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	TPO3	Q06451	622 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	SIA1	Q12212	622 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	RAD52	P06778	471 aa	Known RBP	4.36	□□□□□ -1.71
NUP116	YMR047C	ALG7	P07286	448 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	YCR061W	P25639	631 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	YPT7	P32939	208 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	SPC29	P33419	253 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	PIC2	P40035	300 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	XBP1	P40489	647 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	YJR011C	P47086	261 aa	Predicted RBP	4.36	□□□□□ -1.71
NUP116	YMR047C	UBC12	P52491	188 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	UPS3	Q04006	179 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	YLR446W	Q06204	433 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	LDS2	Q08218	356 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	COX17	Q12287	69 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	YSF3	P0C074	85 aa	Predicted RBP	4.36	□□□□□ -1.71
NUP116	YMR047C	DDI2	P0CH63	225 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	DDI3	P0CH64	225 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	ATS1	P31386	333 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	PTR3	P43606	678 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	PGU1	P47180	361 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	YGL185C	P53100	379 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	MRPL22	P53881	309 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	SNO1	Q03144	224 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	DPP1	Q05521	289 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	PAM18	Q07914	168 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	CRT10	Q08226	957 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	SNX3	Q08826	162 aa	Known RBP	4.36	□□□□□ -1.71
NUP116	YMR047C	ISA2	Q12425	185 aa		4.36	□□□□□ -1.71
NUP116	YMR047C	NHP6A	P11632	93 aa	Known RBP	4.35	□□□□□ -1.71
NUP116	YMR047C	UPS2	P35200	230 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	YPT53	P36019	220 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	SHM2	P37291	469 aa	Known RBP	4.35	□□□□□ -1.71
NUP116	YMR047C	YER188W	P40103	239 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	GLC8	P41818	229 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	MEP2	P41948	499 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	MOG1	P47123	218 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	MCM22	P47167	239 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	NCE101	Q02820	53 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	CTL1	Q03220	320 aa	Known RBP	4.35	□□□□□ -1.71
NUP116	YMR047C	NUP53	Q03790	475 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	YLR224W	Q05947	369 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	FRQ1	Q06389	190 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	MOD5	P07884	428 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	CDC50	P25656	391 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	MCH2	P36032	473 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	YIL060W	P40519	144 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	SNM1	P40993	198 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	NIT2	P47016	307 aa		4.35	□□□□□ -1.71
NUP116	YMR047C	ARO8	P53090	500 aa	Known RBP	4.35	□□□□□ -1.71
NUP116	YMR047C	PKR1	Q03880	122 aa	Known RBP	4.35	□□□□□ -1.71
NUP116	YMR047C	ADH3	P07246	375 aa	Known RBP	4.34	□□□□□ -1.71
NUP116	YMR047C	SNF6	P18888	332 aa		4.34	□□□□□ -1.71
NUP116	YMR047C	IDP1	P21954	428 aa	Known RBP	4.34	□□□□□ -1.71
NUP116	YMR047C	YCP4	P25349	247 aa	Known RBP	4.34	□□□□□ -1.71
NUP116	YMR047C	EHD3	P28817	500 aa		4.34	□□□□□ -1.71
NUP116	YMR047C	EMP70	P32802	667 aa		4.34	□□□□□ -1.71
NUP116	YMR047C	YPC1	P38298	316 aa		4.34	□□□□□ -1.71
NUP116	YMR047C	YHR097C	P38809	366 aa	Known RBP	4.34	□□□□□ -1.71
NUP116	YMR047C	YAR028W	P39548	234 aa		4.34	□□□□□ -1.71
NUP116	YMR047C	SEC72	P39742	193 aa	Known RBP	4.34	□□□□□ -1.71
NUP116	YMR047C	PUG1	P40100	303 aa		4.34	□□□□□ -1.71
NUP116	YMR047C	GAT2	P40209	560 aa		4.34	□□□□□ -1.71
NUP116	YMR047C	ATF1	P40353	525 aa		4.34	□□□□□ -1.71
NUP116	YMR047C	AZF1	P41696	914 aa		4.34	□□□□□ -1.71
NUP116	YMR047C	ADO1	P47143	340 aa	Known RBP	4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 552.2 ms