RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	YJR141W	P47172	347 aa	Predicted RBP	3.63	□□□□□ -1.83
VMA22	YHR060W	NIF3	P53081	288 aa		3.63	□□□□□ -1.83
VMA22	YHR060W	YNL247W	P53852	767 aa	Known RBP	3.63	□□□□□ -1.83
VMA22	YHR060W	HRI1	Q05905	244 aa	Known RBP	3.63	□□□□□ -1.83
VMA22	YHR060W	YLR177W	Q06251	628 aa		3.63	□□□□□ -1.83
VMA22	YHR060W	YPR147C	Q06522	304 aa	Known RBP	3.63	□□□□□ -1.83
VMA22	YHR060W	YOR292C	Q08743	309 aa		3.63	□□□□□ -1.83
VMA22	YHR060W	YKR104W	P0CE69	306 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	SPT15	P13393	240 aa	Known RBP	3.62	□□□□□ -1.83
VMA22	YHR060W	AAT2	P23542	418 aa	Known RBP	3.62	□□□□□ -1.83
VMA22	YHR060W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	3.62	□□□□□ -1.83	not detected
VMA22	YHR060W	GOS1	P38736	223 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	SEN34	P39707	275 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	BMT5	P40493	336 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	YFL064C	P43540	174 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	BRR6	P53062	197 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	YGL159W	P53110	370 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	YGR015C	P53208	328 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	YLR152C	P54072	576 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	SCS7	Q03529	384 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	YMR166C	Q03829	368 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	SPG4	Q04438	115 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	COQ10	Q08058	207 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	RRP40	Q08285	240 aa	Known RBP	3.62	□□□□□ -1.83
VMA22	YHR060W	YLR126C	Q12288	251 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	YCL012C	Q8J0M4	134 aa		3.62	□□□□□ -1.83
VMA22	YHR060W	RPS8A	P0CX39	200 aa	Known RBP	3.61	□□□□□ -1.83
VMA22	YHR060W	RPS8B	P0CX40	200 aa	Known RBP	3.61	□□□□□ -1.83
VMA22	YHR060W	RPL35A	P0CX84	120 aa	Known RBP	3.61	□□□□□ -1.83
VMA22	YHR060W	RPL35B	P0CX85	120 aa	Known RBP	3.61	□□□□□ -1.83
VMA22	YHR060W	PPH21	P23594	369 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	GPX1	P36014	167 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	DRE2	P36152	348 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	SHE1	P38200	338 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	YBR096W	P38256	230 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	MBA1	P38300	278 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	YHI9	P38765	294 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	POG1	P40473	351 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	REE1	P40893	198 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	ERG10	P41338	398 aa	Known RBP	3.61	□□□□□ -1.83
VMA22	YHR060W	STB1	P42845	420 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	TRM9	P49957	279 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	BNS1	P50084	137 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	ALG13	P53178	202 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	MMT2	Q08970	484 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	ERV2	Q12284	196 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	RPL21B	Q12672	160 aa	Known RBP	3.61	□□□□□ -1.83
VMA22	YHR060W	YER078W-A	Q3E7A2	54 aa		3.61	□□□□□ -1.83
VMA22	YHR060W	URA6	P15700	204 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	IMP1	P28627	190 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	YCR087C-A	P37263	153 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	FES1	P38260	290 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	SHE3	P38272	425 aa	Known RBP	3.6	□□□□□ -1.83
VMA22	YHR060W	SRP14	P38985	146 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	OXA1	P39952	402 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	SNZ2	P53824	298 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	ELP3	Q02908	557 aa	Known RBP	3.6	□□□□□ -1.83
VMA22	YHR060W	SDC1	Q03323	175 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	YML108W	Q03759	105 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	RRP17	Q04031	235 aa	Predicted RBP	3.6	□□□□□ -1.83
VMA22	YHR060W	SEI1	Q06058	285 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	MIM1	Q08176	113 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	TPO4	Q12256	659 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	SIR4	P11978	1358 aa		3.6	□□□□□ -1.83
VMA22	YHR060W	ASP3-2	P0CX77	362 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	ASP3-3	P0CX78	362 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	ASP3-4	P0CX79	362 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	ASP3-1	P0CZ17	362 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	SNA3	P14359	133 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	CAT2	P32796	670 aa	Known RBP	3.59	□□□□□ -1.83
VMA22	YHR060W	FRM2	P37261	193 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	SNZ3	P43545	298 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	MMS2	P53152	137 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	YPL278C	Q08990	100 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	TUS1	Q06412	1307 aa		3.59	□□□□□ -1.83
VMA22	YHR060W	QCR2	P07257	368 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	CDC50	P25656	391 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	EHD3	P28817	500 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	TRR1	P29509	319 aa	Known RBP	3.58	□□□□□ -1.84
VMA22	YHR060W	YBR062C	P38239	180 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	TMA22	P47089	198 aa	Predicted RBP	3.58	□□□□□ -1.84
VMA22	YHR060W	YJR056C	P47115	236 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	YGR067C	P53243	804 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	GOT1	Q03554	138 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	YDR124W	Q04608	324 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	INM2	Q05533	292 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	LIP2	Q06005	328 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	NDD1	Q08887	554 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	FDH1	Q08911	376 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	DRS2	P39524	1355 aa		3.58	□□□□□ -1.84
VMA22	YHR060W	ATG15	P25641	520 aa		3.57	□□□□□ -1.84
VMA22	YHR060W	PRY2	P36110	329 aa		3.57	□□□□□ -1.84
VMA22	YHR060W	OM14	P38325	134 aa		3.57	□□□□□ -1.84
VMA22	YHR060W	PHO89	P38361	574 aa		3.57	□□□□□ -1.84
VMA22	YHR060W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	3.57	□□□□□ -1.84	not detected
VMA22	YHR060W	GGC1	P38988	300 aa		3.57	□□□□□ -1.84
VMA22	YHR060W	AVT7	P40501	490 aa		3.57	□□□□□ -1.84
VMA22	YHR060W	MIC19	P43594	170 aa		3.57	□□□□□ -1.84
VMA22	YHR060W	ILM1	P47155	203 aa		3.57	□□□□□ -1.84
VMA22	YHR060W	YJR149W	P47177	404 aa		3.57	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 23.7 ms