RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	VCX1	Q99385	411 aa		4.11	□□□□□ -1.75
VPS29	YHR012W	FUR4	P05316	633 aa	Known RBP	4.1	□□□□□ -1.75
VPS29	YHR012W	GCD1	P09032	578 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS29	YHR012W	YGL041W-A	P0C5N3	154 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	ATR1	P13090	542 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	FUN19	P28003	413 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS29	YHR012W	UBC8	P28263	218 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	DEG1	P31115	442 aa	Known RBP	4.1	□□□□□ -1.75
VPS29	YHR012W	FRM2	P37261	193 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	RTC2	P38279	296 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	ARC40	P38328	384 aa	Known RBP	4.1	□□□□□ -1.75
VPS29	YHR012W	AIM46	P38885	310 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	RRG9	P40156	214 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	PDS1	P40316	373 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS29	YHR012W	SNL1	P40548	159 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	CIN2	P46670	268 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	BNA1	P47096	177 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	HMS2	P47175	358 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	CCC1	P47818	322 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	TYW3	P53177	273 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	PGA1	P53896	198 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	NRK1	P53915	240 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	SAM50	P53969	484 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	DLT1	Q04216	342 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	YMR317W	Q04893	1140 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	GSH2	Q08220	491 aa		4.1	□□□□□ -1.75
VPS29	YHR012W	RPL39	P04650	51 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	SNF4	P12904	322 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	RPL30	P14120	105 aa	Known RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	PTP2	P29461	750 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	OAC1	P32332	324 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	SSE2	P32590	693 aa	Known RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	TMA19	P35691	167 aa	Known RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	ANR2	P36090	516 aa	Predicted RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	YKR015C	P36111	568 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	CTR2	P38865	189 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	TIR3	P40552	269 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	OST1	P41543	476 aa	Known RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	SWP82	P43554	623 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	UFD1	P53044	361 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	COG5	P53951	403 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	HHT1	P61830	136 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	YPL108W	Q02872	168 aa	Predicted RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	PRP3	Q03338	469 aa	Predicted RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	YDR248C	Q03786	193 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	GAL83	Q04739	417 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	PIN3	Q06449	215 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	TPO3	Q06451	622 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	RRP9	Q06506	573 aa	Known RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	ARR2	Q06597	130 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	LUC7	Q07508	261 aa	Predicted RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	RFU1	Q08003	200 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	YLR108C	Q12259	485 aa		4.09	□□□□□ -1.75
VPS29	YHR012W	PST2	Q12335	198 aa	Known RBP	4.09	□□□□□ -1.75
VPS29	YHR012W	MES1	P00958	751 aa	Known RBP	4.08	□□□□□ -1.76
VPS29	YHR012W	TPK3	P05986	398 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	YCL002C	P25565	263 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	RPL5	P26321	297 aa	Known RBP	4.08	□□□□□ -1.76
VPS29	YHR012W	REC114	P32841	428 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	ECT1	P33412	323 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	YOX1	P34161	385 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	PRY2	P36110	329 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	IPT1	P38954	527 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	PIC2	P40035	300 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	NTA1	P40354	457 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	SDP1	P40479	209 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	GZF3	P42944	551 aa	Known RBP	4.08	□□□□□ -1.76
VPS29	YHR012W	CTK2	P46962	323 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	VOA1	P53262	265 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	YPL067C	Q02754	198 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	YMR254C	Q04838	102 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	ATG17	Q06410	417 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	DTD1	Q07648	150 aa	Known RBP	4.08	□□□□□ -1.76
VPS29	YHR012W	SRL1	Q08673	210 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	FCY22	Q12119	530 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	YDL009C	Q12210	107 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	ISA2	Q12425	185 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	YGR161W-C	Q3E744	92 aa		4.08	□□□□□ -1.76
VPS29	YHR012W	TAL1	P15019	335 aa	Known RBP	4.07	□□□□□ -1.76
VPS29	YHR012W	SUA7	P29055	345 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS29	YHR012W	ACH1	P32316	526 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	ICS2	P38284	255 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	DLS1	P40366	167 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	SLM1	P40485	686 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	XPT1	P47165	209 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	TAF4	P50105	388 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	PXR1	P53335	271 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS29	YHR012W	BUD17	P53727	317 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	AAH1	P53909	347 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	YKR005C	Q02203	525 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	SNZ1	Q03148	297 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	ARP10	Q04549	284 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	YOR378W	Q08902	515 aa		4.07	□□□□□ -1.76
VPS29	YHR012W	SOD2	P00447	233 aa		4.06	□□□□□ -1.76
VPS29	YHR012W	SAM35	P14693	329 aa		4.06	□□□□□ -1.76
VPS29	YHR012W	FAR1	P21268	830 aa		4.06	□□□□□ -1.76
VPS29	YHR012W	ZUO1	P32527	433 aa	Known RBP	4.06	□□□□□ -1.76
VPS29	YHR012W	TIF3	P34167	436 aa	Known RBP	4.06	□□□□□ -1.76
VPS29	YHR012W	NAT2	P37293	288 aa		4.06	□□□□□ -1.76
VPS29	YHR012W	TCM62	P38228	572 aa	Known RBP	4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 17 ms