RNA–Protein interactions for RNA: YBR165W

UBS1, Transcript of Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p, yeast

Gene UBS1, Length 834 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBS1	YBR165W	NBP35	P52920	328 aa		2.34	□□□□□ -2.03
UBS1	YBR165W	EBS1	Q03466	884 aa	Known RBP	2.34	□□□□□ -2.03
UBS1	YBR165W	YHR086W-A	Q3E746	53 aa		2.34	□□□□□ -2.03
UBS1	YBR165W	RPP0	P05317	312 aa	Known RBP	2.33	□□□□□ -2.04
UBS1	YBR165W	MEK1	P24719	497 aa	Predicted RBP	2.33	□□□□□ -2.04
UBS1	YBR165W	SCM4	P32564	187 aa		2.33	□□□□□ -2.04
UBS1	YBR165W	YJL028W	P47062	111 aa		2.33	□□□□□ -2.04
UBS1	YBR165W	MDM34	P53083	459 aa		2.33	□□□□□ -2.04
UBS1	YBR165W	SWS2	P53937	143 aa		2.33	□□□□□ -2.04
UBS1	YBR165W	CDC14	Q00684	551 aa		2.33	□□□□□ -2.04
UBS1	YBR165W	PEX12	Q04370	399 aa		2.33	□□□□□ -2.04
UBS1	YBR165W	GEP5	Q12393	293 aa		2.33	□□□□□ -2.04
UBS1	YBR165W	YCR102C	P25608	368 aa		2.32	□□□□□ -2.04
UBS1	YBR165W	RNP1	P32385	249 aa		2.32	□□□□□ -2.04
UBS1	YBR165W	TAD2	P47058	250 aa		2.32	□□□□□ -2.04
UBS1	YBR165W	YGL185C	P53100	379 aa		2.32	□□□□□ -2.04
UBS1	YBR165W	LSB1	P53281	241 aa		2.32	□□□□□ -2.04
UBS1	YBR165W	RAD3	P06839	778 aa		2.31	□□□□□ -2.04
UBS1	YBR165W	PRM9	P39551	298 aa		2.31	□□□□□ -2.04
UBS1	YBR165W	SLX9	P53251	210 aa	Predicted RBP	2.31	□□□□□ -2.04
UBS1	YBR165W	PER33	Q12144	273 aa		2.31	□□□□□ -2.04
UBS1	YBR165W	POF1	P25576	258 aa		2.3	□□□□□ -2.04
UBS1	YBR165W	ECM13	P38195	257 aa		2.3	□□□□□ -2.04
UBS1	YBR165W	YHL049C	P38722	271 aa		2.3	□□□□□ -2.04
UBS1	YBR165W	SHC1	P39000	512 aa		2.3	□□□□□ -2.04
UBS1	YBR165W	TIM21	P53220	239 aa		2.3	□□□□□ -2.04
UBS1	YBR165W	AAH1	P53909	347 aa		2.3	□□□□□ -2.04
UBS1	YBR165W	ARP5	P53946	755 aa		2.3	□□□□□ -2.04
UBS1	YBR165W	BOP2	Q06150	570 aa		2.3	□□□□□ -2.04
UBS1	YBR165W	ARV1	Q06541	321 aa		2.3	□□□□□ -2.04
UBS1	YBR165W	DBP3	P20447	523 aa	Known RBP	2.29	□□□□□ -2.04
UBS1	YBR165W	FMP33	P46998	180 aa		2.29	□□□□□ -2.04
UBS1	YBR165W	YJL118W	P47022	219 aa		2.29	□□□□□ -2.04
UBS1	YBR165W	MNT4	P53745	580 aa		2.29	□□□□□ -2.04
UBS1	YBR165W	PST1	Q12355	444 aa		2.29	□□□□□ -2.04
UBS1	YBR165W	POX1	P13711	748 aa		2.28	□□□□□ -2.04
UBS1	YBR165W	CCA1	P21269	546 aa		2.28	□□□□□ -2.04
UBS1	YBR165W	YSR3	P23501	404 aa		2.28	□□□□□ -2.04
UBS1	YBR165W	MRPL40	P36534	297 aa		2.28	□□□□□ -2.04
UBS1	YBR165W	MAL32	P38158	584 aa		2.28	□□□□□ -2.04
UBS1	YBR165W	MAL12	P53341	584 aa		2.28	□□□□□ -2.04
UBS1	YBR165W	EMI1	Q04406	187 aa		2.28	□□□□□ -2.04
UBS1	YBR165W	SGA1	P08019	549 aa		2.27	□□□□□ -2.05
UBS1	YBR165W	HSM3	P38348	480 aa		2.27	□□□□□ -2.05
UBS1	YBR165W	MRX5	P47007	382 aa		2.26	□□□□□ -2.05
UBS1	YBR165W	RSM10	Q03201	203 aa		2.26	□□□□□ -2.05
UBS1	YBR165W	FMP16	Q12497	93 aa		2.26	□□□□□ -2.05
UBS1	YBR165W	SAS5	Q99314	248 aa		2.26	□□□□□ -2.05
UBS1	YBR165W	DOA4	P32571	926 aa		2.25	□□□□□ -2.05
UBS1	YBR165W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	2.25	□□□□□ -2.05	not detected
UBS1	YBR165W	ASI3	P53983	676 aa		2.25	□□□□□ -2.05
UBS1	YBR165W	SPP2	Q02521	185 aa		2.25	□□□□□ -2.05
UBS1	YBR165W	SME1	Q12330	94 aa	Predicted RBP	2.25	□□□□□ -2.05
UBS1	YBR165W	YIL002W-A	Q3E7Z5	69 aa		2.25	□□□□□ -2.05
UBS1	YBR165W	CWP1	P28319	239 aa		2.24	□□□□□ -2.05
UBS1	YBR165W	YKL070W	P36087	169 aa		2.24	□□□□□ -2.05
UBS1	YBR165W	YFR054C	P43622	192 aa		2.24	□□□□□ -2.05
UBS1	YBR165W	SNX4	P47057	423 aa		2.24	□□□□□ -2.05
UBS1	YBR165W	YLR413W	Q06689	675 aa		2.24	□□□□□ -2.05
UBS1	YBR165W	BOL1	Q3E793	110 aa		2.24	□□□□□ -2.05
UBS1	YBR165W	STH1	P32597	1359 aa		2.23	□□□□□ -2.05
UBS1	YBR165W	PUT1	P09368	476 aa		2.23	□□□□□ -2.05
UBS1	YBR165W	RCY1	P39531	840 aa		2.23	□□□□□ -2.05
UBS1	YBR165W	OST2	P46964	130 aa		2.23	□□□□□ -2.05
UBS1	YBR165W	SLD7	Q08457	257 aa		2.23	□□□□□ -2.05
UBS1	YBR165W	EMP46	Q12396	444 aa		2.23	□□□□□ -2.05
UBS1	YBR165W	MRPL23	Q12487	163 aa	Predicted RBP	2.23	□□□□□ -2.05
UBS1	YBR165W	AYR1	P40471	297 aa		2.22	□□□□□ -2.05
UBS1	YBR165W	DAD3	P69850	94 aa		2.22	□□□□□ -2.05
UBS1	YBR165W	EGD1	Q02642	157 aa	Known RBP	2.22	□□□□□ -2.05
UBS1	YBR165W	CTR3	Q06686	241 aa		2.21	□□□□□ -2.06
UBS1	YBR165W	MET16	P18408	261 aa	Predicted RBP	2.2	□□□□□ -2.06
UBS1	YBR165W	MAL13	P53338	473 aa		2.2	□□□□□ -2.06
UBS1	YBR165W	PEX10	Q05568	337 aa		2.2	□□□□□ -2.06
UBS1	YBR165W	GMC2	Q06201	188 aa		2.2	□□□□□ -2.06
UBS1	YBR165W	DAL80	P26343	269 aa		2.19	□□□□□ -2.06
UBS1	YBR165W	PEX18	P38855	283 aa		2.19	□□□□□ -2.06
UBS1	YBR165W	DSN1	P40568	576 aa		2.19	□□□□□ -2.06
UBS1	YBR165W	SSA3	P09435	649 aa	Known RBP	2.18	□□□□□ -2.06
UBS1	YBR165W	PRS4	P38063	326 aa	Predicted RBP	2.18	□□□□□ -2.06
UBS1	YBR165W	LSM4	P40070	187 aa	Known RBP	2.18	□□□□□ -2.06
UBS1	YBR165W	DDI1	P40087	428 aa		2.18	□□□□□ -2.06
UBS1	YBR165W	YPR011C	Q12251	326 aa		2.18	□□□□□ -2.06
UBS1	YBR165W	COA1	P40452	197 aa		2.17	□□□□□ -2.06
UBS1	YBR165W	SMD3	P43321	101 aa	Known RBP	2.17	□□□□□ -2.06
UBS1	YBR165W	SNF8	Q12483	233 aa		2.17	□□□□□ -2.06
UBS1	YBR165W	MHT1	Q12525	324 aa		2.17	□□□□□ -2.06
UBS1	YBR165W	YBL008W-A	Q3E821	79 aa		2.17	□□□□□ -2.06
UBS1	YBR165W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	2.16	□□□□□ -2.06	not detected
UBS1	YBR165W	RCN1	P36054	211 aa		2.16	□□□□□ -2.06
UBS1	YBR165W	RRF1	P38771	230 aa		2.16	□□□□□ -2.06
UBS1	YBR165W	DOG1	P38774	246 aa		2.16	□□□□□ -2.06
UBS1	YBR165W	YHB1	P39676	399 aa	Known RBP	2.16	□□□□□ -2.06
UBS1	YBR165W	RPL10	P41805	221 aa	Known RBP	2.16	□□□□□ -2.06
UBS1	YBR165W	KAP114	P53067	1004 aa		2.16	□□□□□ -2.06
UBS1	YBR165W	YGL034C	P53186	121 aa		2.16	□□□□□ -2.06
UBS1	YBR165W	ERV25	P54837	211 aa	Known RBP	2.16	□□□□□ -2.06
UBS1	YBR165W	SEC22	P22214	214 aa		2.15	□□□□□ -2.07
UBS1	YBR165W	COS8	P38723	381 aa		2.15	□□□□□ -2.07
UBS1	YBR165W	PRM15	Q03262	622 aa		2.15	□□□□□ -2.07

Retrieved 100 of 5,963 RNA–protein pairs in 28.7 ms