RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W RNA15P25299 296 aaPredicted RBP2.52□□□□□ -2.01
UPF3YGR072W NTG1P31378 399 aa2.52□□□□□ -2.01
UPF3YGR072W ARO4P32449 370 aaKnown RBP2.52□□□□□ -2.01
UPF3YGR072W DBP7P36120 742 aaKnown RBP2.52□□□□□ -2.01
UPF3YGR072W YHI9P38765 294 aa2.52□□□□□ -2.01
UPF3YGR072W GCN20P43535 752 aaKnown RBP2.52□□□□□ -2.01
UPF3YGR072W YGR067CP53243 804 aa2.52□□□□□ -2.01
UPF3YGR072W MRS2Q01926 470 aa2.52□□□□□ -2.01
UPF3YGR072W YPL113CQ02961 396 aa2.52□□□□□ -2.01
UPF3YGR072W DIB1Q06819 143 aaPredicted RBP2.52□□□□□ -2.01
UPF3YGR072W TIR4Q12218 487 aaPredicted RBP2.52□□□□□ -2.01
UPF3YGR072W YOR029WQ12243 111 aa2.52□□□□□ -2.01
UPF3YGR072W YOL085CQ99345 113 aa2.52□□□□□ -2.01
UPF3YGR072W FLO11P08640 1367 aa2.51□□□□□ -2.01
UPF3YGR072W RPL4AP10664 362 aaKnown RBP2.51□□□□□ -2.01
UPF3YGR072W CAT2P32796 670 aaKnown RBP2.51□□□□□ -2.01
UPF3YGR072W MSN4P33749 630 aa2.51□□□□□ -2.01
UPF3YGR072W MRX3P38172 270 aa2.51□□□□□ -2.01
UPF3YGR072W PHO89P38361 574 aa2.51□□□□□ -2.01
UPF3YGR072W YER085CP40058 173 aa2.51□□□□□ -2.01
UPF3YGR072W AVT6P40074 448 aa2.51□□□□□ -2.01
UPF3YGR072W AVT7P40501 490 aa2.51□□□□□ -2.01
UPF3YGR072W RPL4BP49626 362 aaKnown RBP2.51□□□□□ -2.01
UPF3YGR072W FLC3P53121 802 aa2.51□□□□□ -2.01
UPF3YGR072W MAL13P53338 473 aa2.51□□□□□ -2.01
UPF3YGR072W EBS1Q03466 884 aaKnown RBP2.51□□□□□ -2.01
UPF3YGR072W YLR283WQ05867 314 aa2.51□□□□□ -2.01
UPF3YGR072W NNT1Q05874 261 aa2.51□□□□□ -2.01
UPF3YGR072W ECM19Q06011 112 aa2.51□□□□□ -2.01
UPF3YGR072W YDL144CQ07589 356 aa2.51□□□□□ -2.01
UPF3YGR072W CSM4Q08955 156 aa2.51□□□□□ -2.01
UPF3YGR072W MSH5Q12175 901 aa2.51□□□□□ -2.01
UPF3YGR072W FUS3P16892 353 aaKnown RBP2.5□□□□□ -2.01
UPF3YGR072W CDC42P19073 191 aa2.5□□□□□ -2.01
UPF3YGR072W PHO80P20052 293 aa2.5□□□□□ -2.01
UPF3YGR072W COX10P21592 462 aa2.5□□□□□ -2.01
UPF3YGR072W BMH2P34730 273 aaKnown RBP2.5□□□□□ -2.01
UPF3YGR072W BFR1P38934 470 aaKnown RBP RIP-Chip data2.5□□□□□ -2.01not detected
UPF3YGR072W DSN1P40568 576 aa2.5□□□□□ -2.01
UPF3YGR072W SLX9P53251 210 aaPredicted RBP2.5□□□□□ -2.01
UPF3YGR072W CDC14Q00684 551 aa2.5□□□□□ -2.01
UPF3YGR072W PEX10Q05568 337 aa2.5□□□□□ -2.01
UPF3YGR072W YPL150WQ12152 901 aa2.5□□□□□ -2.01
UPF3YGR072W SNU23Q12368 194 aaPredicted RBP2.5□□□□□ -2.01
UPF3YGR072W SNF8Q12483 233 aa2.5□□□□□ -2.01
UPF3YGR072W RPP0P05317 312 aaKnown RBP2.49□□□□□ -2.01
UPF3YGR072W QRI5P32344 111 aa2.49□□□□□ -2.01
UPF3YGR072W POP8P38208 133 aa2.49□□□□□ -2.01
UPF3YGR072W FZO1P38297 855 aa2.49□□□□□ -2.01
UPF3YGR072W ATG12P38316 186 aa2.49□□□□□ -2.01
UPF3YGR072W BDH1P39714 382 aa2.49□□□□□ -2.01
UPF3YGR072W SER33P40510 469 aa2.49□□□□□ -2.01
UPF3YGR072W RPE1P46969 238 aa2.49□□□□□ -2.01
UPF3YGR072W USE1P53146 245 aa2.49□□□□□ -2.01
UPF3YGR072W RSM27P53305 110 aa2.49□□□□□ -2.01
UPF3YGR072W SWS2P53937 143 aa2.49□□□□□ -2.01
UPF3YGR072W ASI3P53983 676 aa2.49□□□□□ -2.01
UPF3YGR072W PIN3Q06449 215 aa2.49□□□□□ -2.01
UPF3YGR072W YPL119C-AQ3E751 87 aa2.49□□□□□ -2.01
UPF3YGR072W AI5_BETAQ9ZZX0 354 aa2.49□□□□□ -2.01
UPF3YGR072W CUP2P15315 225 aa2.48□□□□□ -2.01
UPF3YGR072W CPT1P17898 393 aa2.48□□□□□ -2.01
UPF3YGR072W RPL24BP24000 155 aaKnown RBP2.48□□□□□ -2.01
UPF3YGR072W ERG2P32352 222 aa2.48□□□□□ -2.01
UPF3YGR072W JEN1P36035 616 aa2.48□□□□□ -2.01
UPF3YGR072W MED8P38304 223 aa2.48□□□□□ -2.01
UPF3YGR072W TRR2P38816 342 aa2.48□□□□□ -2.01
UPF3YGR072W THO1P40040 218 aaKnown RBP2.48□□□□□ -2.01
UPF3YGR072W RTR1P40084 226 aaPredicted RBP2.48□□□□□ -2.01
UPF3YGR072W YIR035CP40579 254 aa2.48□□□□□ -2.01
UPF3YGR072W SYS1P41544 203 aa2.48□□□□□ -2.01
UPF3YGR072W HSH155P49955 971 aaKnown RBP2.48□□□□□ -2.01
UPF3YGR072W NBP1P52919 319 aaPredicted RBP2.48□□□□□ -2.01
UPF3YGR072W NBP35P52920 328 aa2.48□□□□□ -2.01
UPF3YGR072W SWT21P53873 357 aaPredicted RBP2.48□□□□□ -2.01
UPF3YGR072W ACT1P60010 375 aaKnown RBP2.48□□□□□ -2.01
UPF3YGR072W SDC1Q03323 175 aa2.48□□□□□ -2.01
UPF3YGR072W ATG17Q06410 417 aa2.48□□□□□ -2.01
UPF3YGR072W RRS1Q08746 203 aaKnown RBP2.48□□□□□ -2.01
UPF3YGR072W YDL211CQ12121 372 aa2.48□□□□□ -2.01
UPF3YGR072W YAL063C-AQ3E791 96 aa2.48□□□□□ -2.01
UPF3YGR072W CFT1Q06632 1357 aaKnown RBP2.48□□□□□ -2.01
UPF3YGR072W TDH2P00358 332 aaKnown RBP2.47□□□□□ -2.01
UPF3YGR072W POX1P13711 748 aa2.47□□□□□ -2.01
UPF3YGR072W MRPL25P23369 157 aa2.47□□□□□ -2.01
UPF3YGR072W YCR025CP25352 136 aa2.47□□□□□ -2.01
UPF3YGR072W ATG15P25641 520 aa2.47□□□□□ -2.01
UPF3YGR072W RPB9P27999 122 aa2.47□□□□□ -2.01
UPF3YGR072W HOM6P31116 359 aaKnown RBP2.47□□□□□ -2.01
UPF3YGR072W HEK2P38199 381 aaKnown RBP RIP-Chip data2.47□□□□□ -2.01not detected
UPF3YGR072W LDB7P38210 180 aa2.47□□□□□ -2.01
UPF3YGR072W YNL095CP53932 642 aa2.47□□□□□ -2.01
UPF3YGR072W SMD1Q02260 146 aaPredicted RBP2.47□□□□□ -2.01
UPF3YGR072W MYO5Q04439 1219 aaKnown RBP2.47□□□□□ -2.01
UPF3YGR072W YPR098CQ06089 161 aa2.47□□□□□ -2.01
UPF3YGR072W DXO1Q06349 442 aa2.47□□□□□ -2.01
UPF3YGR072W RFM1Q12192 310 aa2.47□□□□□ -2.01
UPF3YGR072W YCT1Q12235 531 aa2.47□□□□□ -2.01
UPF3YGR072W IES3Q12345 250 aa2.47□□□□□ -2.01
UPF3YGR072W YDL012CQ12489 107 aa2.47□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 38.5 ms