RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RAT1	YOR048C	YJL049W	P47048	450 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	UBC9	P50623	157 aa	Predicted RBP	4.88	□□□□□ -1.63
RAT1	YOR048C	MTO1	P53070	669 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	RRT7	Q07829	113 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	PHO2	P07269	559 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	MRP2	P10663	115 aa	Predicted RBP	4.87	□□□□□ -1.63
RAT1	YOR048C	FUR1	P18562	216 aa	Known RBP	4.87	□□□□□ -1.63
RAT1	YOR048C	STE18	P18852	110 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	NPR1	P22211	790 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	PDC2	P32896	925 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	WBP1	P33767	430 aa	Known RBP	4.87	□□□□□ -1.63
RAT1	YOR048C	HXT9	P40885	567 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	YFR054C	P43622	192 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	YGL117W	P53133	265 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	TYW3	P53177	273 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	PUS9	Q12069	462 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	ATP16	Q12165	160 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	YLR108C	Q12259	485 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	PCC1	Q3E833	88 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	CCH1	P50077	2039 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	FUR4	P05316	633 aa	Known RBP	4.87	□□□□□ -1.63
RAT1	YOR048C	CTS1	P29029	562 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	CDC13	P32797	924 aa	Known RBP	4.87	□□□□□ -1.63
RAT1	YOR048C	SUI1	P32911	108 aa	Known RBP	4.87	□□□□□ -1.63
RAT1	YOR048C	MIA40	P36046	403 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	ARC40	P38328	384 aa	Known RBP	4.87	□□□□□ -1.63
RAT1	YOR048C	UBP8	P50102	471 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	KAP120	Q02932	1032 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	YMR310C	Q04867	317 aa	Predicted RBP	4.87	□□□□□ -1.63
RAT1	YOR048C	YOL073C	Q08232	322 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	TFB4	Q12004	338 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	NAG1	Q8TGN9	163 aa		4.87	□□□□□ -1.63
RAT1	YOR048C	NHP6B	P11633	99 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	MCK1	P21965	375 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	STE50	P25344	346 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	MXR2	P25566	168 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	TRM7	P38238	310 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	OTU1	P43558	301 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	ALK1	P43633	760 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	NIT3	P49954	291 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	EXG2	P52911	562 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	HEM25	Q07534	307 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	Q0142	Q9ZZW4	58 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	RPP1A	P05318	106 aa	Predicted RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	RPS13	P05756	151 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	STE7	P06784	515 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	CBS1	P14066	229 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	FRS1	P15624	595 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	YPK2	P18961	677 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	MRP17	P28778	131 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	PAN3	P36102	679 aa	Predicted RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	PTC2	P39966	464 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	MNT3	P40549	630 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	DUS1	P53759	423 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	YMR130W	Q04223	302 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	MEX67	Q99257	599 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	DOA4	P32571	926 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	RML2	P32611	393 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	AGA2	P32781	87 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	EMP24	P32803	203 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	ANS1	P38832	159 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	PEX28	P38848	579 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
RAT1	YOR048C	ALP1	P38971	573 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	JHD1	P40034	492 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	RTT105	P40063	208 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	CIN2	P46670	268 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	SSN8	P47821	323 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	UBC12	P52491	188 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	YAP1802	P53309	568 aa		4.86	□□□□□ -1.63
RAT1	YOR048C	NAM8	Q00539	523 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	ELP4	Q02884	456 aa	Known RBP	4.86	□□□□□ -1.63
RAT1	YOR048C	PAU2	P32612	120 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	YBR238C	P38330	731 aa	Known RBP	4.85	□□□□□ -1.63
RAT1	YOR048C	YEL068C	P39977	110 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	YPL113C	Q02961	396 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	DCR2	Q05924	578 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	BTS1	Q12051	335 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	AEP3	Q12089	606 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	ERP4	Q12450	207 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	SEC16	P48415	2195 aa	Known RBP	4.85	□□□□□ -1.63
RAT1	YOR048C	YKR104W	P0CE69	306 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	PMT2	P31382	759 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	DBF20	P32328	564 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	SRB5	P32585	307 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	APD1	P38281	316 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	LYS1	P38998	373 aa	RIP-Chip data	4.85	□□□□□ -1.63	not detected
RAT1	YOR048C	YIL166C	P40445	542 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	SCY1	P53009	804 aa		4.85	□□□□□ -1.63
RAT1	YOR048C	TDH2	P00358	332 aa	Known RBP	4.84	□□□□□ -1.63
RAT1	YOR048C	TPI1	P00942	248 aa	Known RBP	4.84	□□□□□ -1.63
RAT1	YOR048C	STE12	P13574	688 aa		4.84	□□□□□ -1.63
RAT1	YOR048C	RPB8	P20436	146 aa		4.84	□□□□□ -1.63
RAT1	YOR048C	MGR1	P25573	417 aa		4.84	□□□□□ -1.63
RAT1	YOR048C	CAM1	P29547	415 aa	Known RBP	4.84	□□□□□ -1.63
RAT1	YOR048C	YKL097C	P34245	136 aa		4.84	□□□□□ -1.63
RAT1	YOR048C	SFK1	P35735	353 aa		4.84	□□□□□ -1.63
RAT1	YOR048C	OMA1	P36163	345 aa		4.84	□□□□□ -1.63
RAT1	YOR048C	POA1	P38218	177 aa		4.84	□□□□□ -1.63
RAT1	YOR048C	FIG1	P38224	298 aa		4.84	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 7 ms