RNA–Protein interactions for RNA: YNL330C

RPD3, Transcript of Histone deacetylase, component of both the Rpd3S and Rpd3L complexes, yeastyeast

Gene RPD3, Length 1,302 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPD3YNL330C KAP120Q02932 1032 aa7.89□□□□□ -1.15
RPD3YNL330C UTP15Q04305 513 aaKnown RBP7.89□□□□□ -1.15
RPD3YNL330C SMA2Q04658 369 aa7.89□□□□□ -1.15
RPD3YNL330C UTP21Q06078 939 aaPredicted RBP7.89□□□□□ -1.15
RPD3YNL330C AIM6Q07716 390 aa7.89□□□□□ -1.15
RPD3YNL330C IRC13Q08630 104 aa7.89□□□□□ -1.15
RPD3YNL330C YOR378WQ08902 515 aa7.89□□□□□ -1.15
RPD3YNL330C FMP40Q08968 688 aaPredicted RBP7.89□□□□□ -1.15
RPD3YNL330C YGL194C-AQ2V2P6 80 aa7.89□□□□□ -1.15
RPD3YNL330C YHR213W-AQ8TGT4 77 aa7.89□□□□□ -1.15
RPD3YNL330C ADK1P07170 222 aaKnown RBP7.88□□□□□ -1.15
RPD3YNL330C PPH21P23594 369 aa7.88□□□□□ -1.15
RPD3YNL330C PTP1P25044 335 aa7.88□□□□□ -1.15
RPD3YNL330C TIM12P32830 109 aa7.88□□□□□ -1.15
RPD3YNL330C SPT23P35210 1082 aa7.88□□□□□ -1.15
RPD3YNL330C BET3P36149 193 aa7.88□□□□□ -1.15
RPD3YNL330C VBA2P38358 474 aaKnown RBP7.88□□□□□ -1.15
RPD3YNL330C LYS1P38998 373 aaRIP-Chip data7.88□□□□□ -1.15not detected
RPD3YNL330C OYE3P41816 400 aaPredicted RBP7.88□□□□□ -1.15
RPD3YNL330C ASI3P53983 676 aa7.88□□□□□ -1.15
RPD3YNL330C SSY1Q03770 852 aa7.88□□□□□ -1.15
RPD3YNL330C TY1A-MR1Q04215 440 aa7.88□□□□□ -1.15
RPD3YNL330C YPR109WQ06104 294 aa7.88□□□□□ -1.15
RPD3YNL330C RSC58Q07979 502 aa7.88□□□□□ -1.15
RPD3YNL330C TY1A-BLQ12266 440 aa7.88□□□□□ -1.15
RPD3YNL330C DFG16Q99234 619 aa7.88□□□□□ -1.15
RPD3YNL330C PRP2P20095 876 aaPredicted RBP7.87□□□□□ -1.15
RPD3YNL330C CNE1P27825 502 aa7.87□□□□□ -1.15
RPD3YNL330C CDC13P32797 924 aaKnown RBP7.87□□□□□ -1.15
RPD3YNL330C CHK1P38147 527 aa7.87□□□□□ -1.15
RPD3YNL330C TCM62P38228 572 aaKnown RBP7.87□□□□□ -1.15
RPD3YNL330C ANS1P38832 159 aa7.87□□□□□ -1.15
RPD3YNL330C SMB1P40018 196 aaKnown RBP7.87□□□□□ -1.15
RPD3YNL330C LRO1P40345 661 aa7.87□□□□□ -1.15
RPD3YNL330C ALB1P47019 175 aaPredicted RBP7.87□□□□□ -1.15
RPD3YNL330C YJR120WP47157 116 aa7.87□□□□□ -1.15
RPD3YNL330C YGL204CP53089 101 aa7.87□□□□□ -1.15
RPD3YNL330C VHT1P53241 593 aa7.87□□□□□ -1.15
RPD3YNL330C OGG1P53397 376 aaPredicted RBP7.87□□□□□ -1.15
RPD3YNL330C YNR062CP53748 327 aa7.87□□□□□ -1.15
RPD3YNL330C TIM44Q01852 431 aa7.87□□□□□ -1.15
RPD3YNL330C INP1Q03694 420 aa7.87□□□□□ -1.15
RPD3YNL330C YDR249CQ03787 373 aa7.87□□□□□ -1.15
RPD3YNL330C TY1A-DR2Q03964 440 aaKnown RBP7.87□□□□□ -1.15
RPD3YNL330C GAS2Q06135 555 aa7.87□□□□□ -1.15
RPD3YNL330C HDA2Q06629 674 aa7.87□□□□□ -1.15
RPD3YNL330C YPR084WQ06821 456 aa7.87□□□□□ -1.15
RPD3YNL330C YOR365CQ08844 703 aa7.87□□□□□ -1.15
RPD3YNL330C MMP1Q12372 583 aa7.87□□□□□ -1.15
RPD3YNL330C TRM13Q12383 476 aa7.87□□□□□ -1.15
RPD3YNL330C AI1P03875 834 aa7.86□□□□□ -1.15
RPD3YNL330C HOM3P10869 527 aa7.86□□□□□ -1.15
RPD3YNL330C MRP17P28778 131 aa7.86□□□□□ -1.15
RPD3YNL330C PRE2P30656 287 aaKnown RBP7.86□□□□□ -1.15
RPD3YNL330C ERG24P32462 438 aaKnown RBP7.86□□□□□ -1.15
RPD3YNL330C PTR2P32901 601 aa7.86□□□□□ -1.15
RPD3YNL330C YKL071WP36086 256 aa7.86□□□□□ -1.15
RPD3YNL330C PEX32P38292 413 aa7.86□□□□□ -1.15
RPD3YNL330C SKN7P38889 622 aa7.86□□□□□ -1.15
RPD3YNL330C LEM3P42838 414 aa7.86□□□□□ -1.15
RPD3YNL330C IBA57P47158 497 aa7.86□□□□□ -1.15
RPD3YNL330C SOK2P53438 785 aaPredicted RBP7.86□□□□□ -1.15
RPD3YNL330C YNR061CP53747 219 aa7.86□□□□□ -1.15
RPD3YNL330C GIM3P53900 129 aa7.86□□□□□ -1.15
RPD3YNL330C HPF1Q05164 967 aa7.86□□□□□ -1.15
RPD3YNL330C NMA1Q06178 401 aaKnown RBP7.86□□□□□ -1.15
RPD3YNL330C ISU2Q12056 156 aa7.86□□□□□ -1.15
RPD3YNL330C PRM4Q12498 284 aa7.86□□□□□ -1.15
RPD3YNL330C AAC1P04710 309 aa7.85□□□□□ -1.15
RPD3YNL330C YPK2P18961 677 aa7.85□□□□□ -1.15
RPD3YNL330C BET2P20133 325 aa7.85□□□□□ -1.15
RPD3YNL330C RML2P32611 393 aa7.85□□□□□ -1.15
RPD3YNL330C GPX1P36014 167 aa7.85□□□□□ -1.15
RPD3YNL330C CBT1P36038 271 aaPredicted RBP7.85□□□□□ -1.15
RPD3YNL330C YBR238CP38330 731 aaKnown RBP7.85□□□□□ -1.15
RPD3YNL330C OSH7P38755 437 aa7.85□□□□□ -1.15
RPD3YNL330C PZF1P39933 429 aa7.85□□□□□ -1.15
RPD3YNL330C YER184CP39961 794 aa7.85□□□□□ -1.15
RPD3YNL330C YIL108WP40483 696 aaKnown RBP7.85□□□□□ -1.15
RPD3YNL330C UBX6P47049 396 aa7.85□□□□□ -1.15
RPD3YNL330C CCC1P47818 322 aa7.85□□□□□ -1.15
RPD3YNL330C TPC1P53257 314 aa7.85□□□□□ -1.15
RPD3YNL330C SLI1P53304 468 aa7.85□□□□□ -1.15
RPD3YNL330C EGD1Q02642 157 aaKnown RBP7.85□□□□□ -1.15
RPD3YNL330C GUP2Q08929 609 aa7.85□□□□□ -1.15
RPD3YNL330C TMS1Q12116 473 aa7.85□□□□□ -1.15
RPD3YNL330C RPP1AP05318 106 aaPredicted RBP7.84□□□□□ -1.15
RPD3YNL330C PBN1P25580 416 aa7.84□□□□□ -1.15
RPD3YNL330C YCR061WP25639 631 aa7.84□□□□□ -1.15
RPD3YNL330C YKL097CP34245 136 aa7.84□□□□□ -1.15
RPD3YNL330C MRPL36P36531 177 aa7.84□□□□□ -1.15
RPD3YNL330C MRPL16P38064 232 aa7.84□□□□□ -1.15
RPD3YNL330C SDS24P38314 527 aa7.84□□□□□ -1.15
RPD3YNL330C GRE3P38715 327 aaKnown RBP RIP-Chip data7.84□□□□□ -1.15not detected
RPD3YNL330C RPP1P38786 293 aa7.84□□□□□ -1.15
RPD3YNL330C GTF1P53260 183 aaPredicted RBP7.84□□□□□ -1.15
RPD3YNL330C REP2P03872 296 aa7.83□□□□□ -1.16
RPD3YNL330C PUT1P09368 476 aa7.83□□□□□ -1.16
RPD3YNL330C FUS3P16892 353 aaKnown RBP7.83□□□□□ -1.16
RPD3YNL330C HXT2P23585 541 aa7.83□□□□□ -1.16
Retrieved 100 of 5,963 RNA–protein pairs in 23.2 ms