RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W COS1P53822 381 aa5.47□□□□□ -1.53
CAF40YNL288W SPC19Q03954 165 aa5.47□□□□□ -1.53
CAF40YNL288W SNX41Q04053 625 aa5.47□□□□□ -1.53
CAF40YNL288W SNO4Q04902 237 aa5.47□□□□□ -1.53
CAF40YNL288W HSP33Q08914 237 aaKnown RBP5.47□□□□□ -1.53
CAF40YNL288W HSP32Q08992 237 aa5.47□□□□□ -1.53
CAF40YNL288W HER1Q12276 1246 aa5.47□□□□□ -1.53
CAF40YNL288W YPR071WQ12346 211 aa5.47□□□□□ -1.53
CAF40YNL288W PNS1Q12412 539 aa5.47□□□□□ -1.53
CAF40YNL288W SET6Q12529 373 aa5.47□□□□□ -1.53
CAF40YNL288W Q0144Q9ZZW2 109 aa5.47□□□□□ -1.53
CAF40YNL288W FLO9P39712 1322 aa5.47□□□□□ -1.53
CAF40YNL288W STE12P13574 688 aa5.46□□□□□ -1.54
CAF40YNL288W UTR1P21373 530 aa5.46□□□□□ -1.54
CAF40YNL288W YEF1P32622 495 aa5.46□□□□□ -1.54
CAF40YNL288W REC104P33323 182 aa5.46□□□□□ -1.54
CAF40YNL288W RPS20P38701 121 aaKnown RBP5.46□□□□□ -1.54
CAF40YNL288W SBE22P38814 852 aa5.46□□□□□ -1.54
CAF40YNL288W FET3P38993 636 aa5.46□□□□□ -1.54
CAF40YNL288W GDI1P39958 451 aaKnown RBP5.46□□□□□ -1.54
CAF40YNL288W POP1P41812 875 aa5.46□□□□□ -1.54
CAF40YNL288W BNA3P47039 444 aaKnown RBP5.46□□□□□ -1.54
CAF40YNL288W YGR066CP53242 292 aa5.46□□□□□ -1.54
CAF40YNL288W ASI1P54074 624 aa5.46□□□□□ -1.54
CAF40YNL288W MRPL1Q04599 285 aa5.46□□□□□ -1.54
CAF40YNL288W HRI1Q05905 244 aaKnown RBP5.46□□□□□ -1.54
CAF40YNL288W MLC2Q06580 163 aa5.46□□□□□ -1.54
CAF40YNL288W NTG2Q08214 380 aa5.46□□□□□ -1.54
CAF40YNL288W RDL2Q08742 149 aaKnown RBP5.46□□□□□ -1.54
CAF40YNL288W GRE1Q08969 168 aa5.46□□□□□ -1.54
CAF40YNL288W SPC3Q12133 184 aa5.46□□□□□ -1.54
CAF40YNL288W YRM1Q12340 786 aa5.46□□□□□ -1.54
CAF40YNL288W YPL119C-AQ3E751 87 aa5.46□□□□□ -1.54
CAF40YNL288W CBP6P07253 162 aaPredicted RBP5.45□□□□□ -1.54
CAF40YNL288W RFA1P22336 621 aaKnown RBP5.45□□□□□ -1.54
CAF40YNL288W ERG9P29704 444 aa5.45□□□□□ -1.54
CAF40YNL288W PRP21P32524 280 aaPredicted RBP5.45□□□□□ -1.54
CAF40YNL288W YBR138CP38277 524 aa5.45□□□□□ -1.54
CAF40YNL288W YBR285WP38354 144 aa5.45□□□□□ -1.54
CAF40YNL288W ARN2P38724 620 aa5.45□□□□□ -1.54
CAF40YNL288W YLF2P38746 405 aa5.45□□□□□ -1.54
CAF40YNL288W GPI16P38875 610 aa5.45□□□□□ -1.54
CAF40YNL288W MLH1P38920 769 aa5.45□□□□□ -1.54
CAF40YNL288W SHO1P40073 367 aa5.45□□□□□ -1.54
CAF40YNL288W TOK1P40310 691 aa5.45□□□□□ -1.54
CAF40YNL288W GVP36P40531 326 aaKnown RBP5.45□□□□□ -1.54
CAF40YNL288W SWP82P43554 623 aa5.45□□□□□ -1.54
CAF40YNL288W HMS2P47175 358 aa5.45□□□□□ -1.54
CAF40YNL288W OGG1P53397 376 aaPredicted RBP5.45□□□□□ -1.54
CAF40YNL288W YMR099CQ03161 297 aaKnown RBP5.45□□□□□ -1.54
CAF40YNL288W YMD8Q03697 442 aa5.45□□□□□ -1.54
CAF40YNL288W ELP6Q04868 273 aa5.45□□□□□ -1.54
CAF40YNL288W GAS2Q06135 555 aa5.45□□□□□ -1.54
CAF40YNL288W FMP45Q07651 309 aa5.45□□□□□ -1.54
CAF40YNL288W BTS1Q12051 335 aa5.45□□□□□ -1.54
CAF40YNL288W YDL007C-AQ2V2Q0 85 aa5.45□□□□□ -1.54
CAF40YNL288W SED4P25365 1065 aa5.44□□□□□ -1.54
CAF40YNL288W PRE2P30656 287 aaKnown RBP5.44□□□□□ -1.54
CAF40YNL288W CHK1P38147 527 aa5.44□□□□□ -1.54
CAF40YNL288W RPP1P38786 293 aa5.44□□□□□ -1.54
CAF40YNL288W PDS1P40316 373 aaPredicted RBP5.44□□□□□ -1.54
CAF40YNL288W STB1P42845 420 aa5.44□□□□□ -1.54
CAF40YNL288W YGR126WP53274 230 aa5.44□□□□□ -1.54
CAF40YNL288W SNF12P53628 566 aa5.44□□□□□ -1.54
CAF40YNL288W HOT1Q03213 719 aa5.44□□□□□ -1.54
CAF40YNL288W SCS7Q03529 384 aa5.44□□□□□ -1.54
CAF40YNL288W VBA4Q04602 768 aaKnown RBP5.44□□□□□ -1.54
CAF40YNL288W YPR147CQ06522 304 aaKnown RBP5.44□□□□□ -1.54
CAF40YNL288W NIP7Q08962 181 aaKnown RBP5.44□□□□□ -1.54
CAF40YNL288W COX17Q12287 69 aa5.44□□□□□ -1.54
CAF40YNL288W YOR343CQ12484 108 aa5.44□□□□□ -1.54
CAF40YNL288W HBN1Q96VH4 193 aa5.44□□□□□ -1.54
CAF40YNL288W YAL064W-BO13512 126 aa5.43□□□□□ -1.54
CAF40YNL288W CTA1P15202 515 aa5.43□□□□□ -1.54
CAF40YNL288W RPB8P20436 146 aa5.43□□□□□ -1.54
CAF40YNL288W IDP1P21954 428 aaKnown RBP5.43□□□□□ -1.54
CAF40YNL288W MDH2P22133 377 aa5.43□□□□□ -1.54
CAF40YNL288W OAC1P32332 324 aa5.43□□□□□ -1.54
CAF40YNL288W EGD2P38879 174 aaKnown RBP5.43□□□□□ -1.54
CAF40YNL288W CHL4P38907 458 aa5.43□□□□□ -1.54
CAF40YNL288W SOP4P39543 234 aaPredicted RBP5.43□□□□□ -1.54
CAF40YNL288W YER184CP39961 794 aa5.43□□□□□ -1.54
CAF40YNL288W KRE29P40026 464 aa5.43□□□□□ -1.54
CAF40YNL288W RFC4P40339 323 aaKnown RBP5.43□□□□□ -1.54
CAF40YNL288W YIL169CP40442 995 aa5.43□□□□□ -1.54
CAF40YNL288W XBP1P40489 647 aa5.43□□□□□ -1.54
CAF40YNL288W RET2P43621 546 aa5.43□□□□□ -1.54
CAF40YNL288W IRC7P43623 340 aa5.43□□□□□ -1.54
CAF40YNL288W NIT2P47016 307 aa5.43□□□□□ -1.54
CAF40YNL288W MSE1P48525 536 aa5.43□□□□□ -1.54
CAF40YNL288W COS10P52924 374 aa5.43□□□□□ -1.54
CAF40YNL288W SLD3P53135 668 aa5.43□□□□□ -1.54
CAF40YNL288W NQM1P53228 333 aaPredicted RBP5.43□□□□□ -1.54
CAF40YNL288W NUM1Q00402 2748 aa5.42□□□□□ -1.54
CAF40YNL288W PHO80P20052 293 aa5.42□□□□□ -1.54
CAF40YNL288W MDH3P32419 343 aaKnown RBP RIP-Chip data5.42□□□□□ -1.54not detected
CAF40YNL288W PAD1P33751 242 aaKnown RBP RIP-Chip data5.42□□□□□ -1.54not detected
CAF40YNL288W RTC2P38279 296 aa5.42□□□□□ -1.54
CAF40YNL288W YMR262WP38430 313 aa5.42□□□□□ -1.54
CAF40YNL288W MSS2P40990 351 aa5.42□□□□□ -1.54
Retrieved 100 of 5,963 RNA–protein pairs in 36.9 ms