RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	NMD4	Q12129	218 aa		3.86	□□□□□ -1.79
HSP42	YDR171W	YRM1	Q12340	786 aa		3.86	□□□□□ -1.79
HSP42	YDR171W	YDL199C	Q12407	687 aa		3.86	□□□□□ -1.79
HSP42	YDR171W	ERP4	Q12450	207 aa		3.86	□□□□□ -1.79
HSP42	YDR171W	MTR10	Q99189	972 aa		3.86	□□□□□ -1.79
HSP42	YDR171W	STT4	P37297	1900 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	TDH1	P00360	332 aa	Known RBP	3.85	□□□□□ -1.79
HSP42	YDR171W	RAD52	P06778	471 aa	Known RBP	3.85	□□□□□ -1.79
HSP42	YDR171W	TFS1	P14306	219 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	MET8	P15807	274 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	UTR4	P32626	227 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	YBR144C	P34215	104 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	RSM22	P36056	628 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	YBR063C	P38083	404 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	GEP4	P38812	185 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	NVJ1	P38881	321 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	3.85	□□□□□ -1.79	not detected
HSP42	YDR171W	SSO2	P39926	295 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	YND1	P40009	630 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	ATM1	P40416	690 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	AZF1	P41696	914 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	ATG18	P43601	500 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	HMS2	P47175	358 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	MPC1	P53157	130 aa	Known RBP	3.85	□□□□□ -1.79
HSP42	YDR171W	RRN9	P53437	365 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	YMR279C	Q03263	540 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	YMR010W	Q03687	405 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	YMR130W	Q04223	302 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	RRN11	Q04712	507 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	RSF1	Q05043	376 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	YLR446W	Q06204	433 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	ARV1	Q06541	321 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	SKI7	Q08491	747 aa	Predicted RBP	3.85	□□□□□ -1.79
HSP42	YDR171W	FMP40	Q08968	688 aa	Predicted RBP	3.85	□□□□□ -1.79
HSP42	YDR171W	SIA1	Q12212	622 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	YOR012W	Q12351	137 aa		3.85	□□□□□ -1.79
HSP42	YDR171W	RAS2	P01120	322 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	RPL4A	P10664	362 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	APE1	P14904	514 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	FUS3	P16892	353 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	OLE1	P21147	510 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	MNE1	P24720	663 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	BOS1	P25385	244 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	PEX34	P25584	144 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	NAM9	P27929	486 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	BEM1	P29366	551 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	SNC1	P31109	117 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	ECM25	P32525	599 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	SDH3	P33421	198 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	MTR2	P34232	184 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	PHD1	P36093	366 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	RPL32	P38061	130 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	NSG1	P38837	291 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	MDM31	P38880	579 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	YEL028W	P39989	153 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	RTT105	P40063	208 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	LSM5	P40089	93 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	RRG9	P40156	214 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	MPM1	P40364	252 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	3.84	□□□□□ -1.79	not detected
HSP42	YDR171W	ERG10	P41338	398 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	ROK1	P45818	564 aa	Predicted RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	AIM22	P47051	409 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	PET130	P47065	347 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	JHD2	P47156	728 aa	Predicted RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	RPL4B	P49626	362 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	SCS3	P53012	380 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	JAC1	P53193	184 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	SHY1	P53266	389 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	SMM1	P53720	384 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	DUG3	P53871	357 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	IGO1	P53897	168 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	SLG1	P54867	378 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	IRC15	Q02733	499 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	RPC11	Q04307	110 aa	Predicted RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	RIF2	Q06208	395 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	GPN3	Q06543	272 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	RRT8	Q08219	342 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	YLR126C	Q12288	251 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	CSR2	Q12734	1121 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	RRP12	Q12754	1228 aa	Known RBP	3.84	□□□□□ -1.79
HSP42	YDR171W	CMC2	Q3E7A4	109 aa		3.84	□□□□□ -1.79
HSP42	YDR171W	SPT3	P06844	337 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	PEP4	P07267	405 aa	Known RBP	3.83	□□□□□ -1.8
HSP42	YDR171W	UNG1	P12887	359 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	CBS1	P14066	229 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	RPS1B	P23248	255 aa	Known RBP	3.83	□□□□□ -1.8
HSP42	YDR171W	BUD5	P25300	642 aa	Predicted RBP	3.83	□□□□□ -1.8
HSP42	YDR171W	RRP7	P25368	297 aa	Predicted RBP	3.83	□□□□□ -1.8
HSP42	YDR171W	RPS2	P25443	254 aa	Known RBP	3.83	□□□□□ -1.8
HSP42	YDR171W	ACB1	P31787	87 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	SRB6	P32570	121 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	TRS65	P32893	560 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	PDC2	P32896	925 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	REG2	P38232	338 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	AIM2	P39721	246 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	RMD6	P39975	231 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	RGI2	P40188	164 aa		3.83	□□□□□ -1.8
HSP42	YDR171W	ARF3	P40994	183 aa	RIP-Chip data	3.83	□□□□□ -1.8	not detected
HSP42	YDR171W	CAK1	P43568	368 aa	Predicted RBP	3.83	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 17.9 ms