RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W CWC23P52868 283 aaPredicted RBP12.62□□□□□ -0.39
DEP1YAL013W VOA1P53262 265 aa12.62□□□□□ -0.39
DEP1YAL013W YPR147CQ06522 304 aaKnown RBP12.62□□□□□ -0.39
DEP1YAL013W QCR7P00128 127 aa12.61□□□□□ -0.39
DEP1YAL013W COX9P07255 59 aa12.61□□□□□ -0.39
DEP1YAL013W YHR214C-DP0CX93 97 aa12.61□□□□□ -0.39
DEP1YAL013W ERG8P24521 451 aa12.61□□□□□ -0.39
DEP1YAL013W PUT3P25502 979 aaPredicted RBP12.61□□□□□ -0.39
DEP1YAL013W YCR102CP25608 368 aa12.61□□□□□ -0.39
DEP1YAL013W FUN26P31381 517 aa12.61□□□□□ -0.39
DEP1YAL013W PTH1P38876 190 aaKnown RBP12.61□□□□□ -0.39
DEP1YAL013W SDP1P40479 209 aa12.61□□□□□ -0.39
DEP1YAL013W APM1Q00776 475 aaPredicted RBP12.61□□□□□ -0.39
DEP1YAL013W AIM6Q07716 390 aa12.61□□□□□ -0.39
DEP1YAL013W RDL2Q08742 149 aaKnown RBP12.61□□□□□ -0.39
DEP1YAL013W OPI3P05375 206 aa12.6□□□□□ -0.39
DEP1YAL013W DOA4P32571 926 aa12.6□□□□□ -0.39
DEP1YAL013W VPS17P32913 551 aa12.6□□□□□ -0.39
DEP1YAL013W CCZ1P38273 704 aa12.6□□□□□ -0.39
DEP1YAL013W MBA1P38300 278 aa12.6□□□□□ -0.39
DEP1YAL013W PAM16P42949 149 aa12.6□□□□□ -0.39
DEP1YAL013W YGR126WP53274 230 aa12.6□□□□□ -0.39
DEP1YAL013W CIK1Q01649 594 aa12.6□□□□□ -0.39
DEP1YAL013W NUP116Q02630 1113 aa12.6□□□□□ -0.39
DEP1YAL013W RSM28Q03430 361 aa12.6□□□□□ -0.39
DEP1YAL013W MSS11Q03825 758 aa12.6□□□□□ -0.39
DEP1YAL013W MRPL35Q06678 367 aa12.6□□□□□ -0.39
DEP1YAL013W MDM32Q12171 622 aa12.6□□□□□ -0.39
DEP1YAL013W MRP1P10662 321 aaKnown RBP12.59□□□□□ -0.39
DEP1YAL013W SEC62P21825 274 aa12.59□□□□□ -0.39
DEP1YAL013W ECO1P43605 281 aa12.59□□□□□ -0.39
DEP1YAL013W IMD3P50095 523 aaKnown RBP12.59□□□□□ -0.39
DEP1YAL013W BRR6P53062 197 aa12.59□□□□□ -0.39
DEP1YAL013W MRH4P53166 561 aa12.59□□□□□ -0.39
DEP1YAL013W SAY1P53324 424 aa12.59□□□□□ -0.39
DEP1YAL013W YPL039WQ03080 316 aa12.59□□□□□ -0.39
DEP1YAL013W YMR252CQ04814 134 aa12.59□□□□□ -0.39
DEP1YAL013W BRE4Q07660 1125 aa12.59□□□□□ -0.39
DEP1YAL013W YPR1Q12458 312 aa12.59□□□□□ -0.39
DEP1YAL013W CTA1P15202 515 aa12.58□□□□□ -0.4
DEP1YAL013W PPA2P28239 310 aa12.58□□□□□ -0.4
DEP1YAL013W THI4P32318 326 aa12.58□□□□□ -0.4
DEP1YAL013W NPL6P32832 435 aa12.58□□□□□ -0.4
DEP1YAL013W CHS7P38843 316 aa12.58□□□□□ -0.4
DEP1YAL013W YJL055WP47044 245 aa12.58□□□□□ -0.4
DEP1YAL013W PMT5P52867 743 aa12.58□□□□□ -0.4
DEP1YAL013W HOL1P53389 586 aa12.58□□□□□ -0.4
DEP1YAL013W BNA7Q04066 261 aa12.58□□□□□ -0.4
DEP1YAL013W VBA4Q04602 768 aaKnown RBP12.58□□□□□ -0.4
DEP1YAL013W GPN3Q06543 272 aa12.58□□□□□ -0.4
DEP1YAL013W PEX27Q08580 376 aa12.58□□□□□ -0.4
DEP1YAL013W CDC31P06704 161 aaKnown RBP12.57□□□□□ -0.4
DEP1YAL013W STE50P25344 346 aa12.57□□□□□ -0.4
DEP1YAL013W REE1P40893 198 aa12.57□□□□□ -0.4
DEP1YAL013W POP1P41812 875 aa12.57□□□□□ -0.4
DEP1YAL013W ATG4P53867 494 aa12.57□□□□□ -0.4
DEP1YAL013W AGE1Q04412 482 aa12.57□□□□□ -0.4
DEP1YAL013W MIM1Q08176 113 aa12.57□□□□□ -0.4
DEP1YAL013W RTN2Q12443 393 aa12.57□□□□□ -0.4
DEP1YAL013W SFG1Q12507 346 aa12.57□□□□□ -0.4
DEP1YAL013W YLR099W-AQ3E798 87 aa12.57□□□□□ -0.4
DEP1YAL013W SUS1Q6WNK7 96 aa12.57□□□□□ -0.4
DEP1YAL013W MTR10Q99189 972 aa12.57□□□□□ -0.4
DEP1YAL013W FLO9P39712 1322 aa12.57□□□□□ -0.4
DEP1YAL013W YAL064W-BO13512 126 aa12.56□□□□□ -0.4
DEP1YAL013W NFS1P25374 497 aa12.56□□□□□ -0.4
DEP1YAL013W BOS1P25385 244 aa12.56□□□□□ -0.4
DEP1YAL013W SPT14P32363 452 aa12.56□□□□□ -0.4
DEP1YAL013W ANR2P36090 516 aaPredicted RBP12.56□□□□□ -0.4
DEP1YAL013W RFC4P40339 323 aaKnown RBP12.56□□□□□ -0.4
DEP1YAL013W SER2P42941 309 aa12.56□□□□□ -0.4
DEP1YAL013W CCC1P47818 322 aa12.56□□□□□ -0.4
DEP1YAL013W TDA1Q03533 586 aa12.56□□□□□ -0.4
DEP1YAL013W YPL278CQ08990 100 aa12.56□□□□□ -0.4
DEP1YAL013W BAG7Q12128 409 aa12.56□□□□□ -0.4
DEP1YAL013W YBL113CQ7M4S9 792 aa12.56□□□□□ -0.4
DEP1YAL013W NUD1P32336 851 aa12.55□□□□□ -0.4
DEP1YAL013W PEX32P38292 413 aa12.55□□□□□ -0.4
DEP1YAL013W PBP1P53297 722 aaKnown RBP12.55□□□□□ -0.4
DEP1YAL013W SDC1Q03323 175 aa12.55□□□□□ -0.4
DEP1YAL013W RSM24Q03976 319 aa12.55□□□□□ -0.4
DEP1YAL013W MIX14Q04341 121 aa12.55□□□□□ -0.4
DEP1YAL013W NIP7Q08962 181 aaKnown RBP12.55□□□□□ -0.4
DEP1YAL013W RPS13P05756 151 aaKnown RBP12.54□□□□□ -0.4
DEP1YAL013W PAU2P32612 120 aa12.54□□□□□ -0.4
DEP1YAL013W IPI1P38803 334 aaPredicted RBP12.54□□□□□ -0.4
DEP1YAL013W SHO1P40073 367 aa12.54□□□□□ -0.4
DEP1YAL013W ATG18P43601 500 aa12.54□□□□□ -0.4
DEP1YAL013W RPA14P50106 137 aa12.54□□□□□ -0.4
DEP1YAL013W YGL204CP53089 101 aa12.54□□□□□ -0.4
DEP1YAL013W YKR005CQ02203 525 aa12.54□□□□□ -0.4
DEP1YAL013W SSY1Q03770 852 aa12.54□□□□□ -0.4
DEP1YAL013W YOL024WQ08172 172 aa12.54□□□□□ -0.4
DEP1YAL013W HMS1Q12398 434 aa12.54□□□□□ -0.4
DEP1YAL013W CPR2P23285 205 aa12.53□□□□□ -0.4
DEP1YAL013W ATS1P31386 333 aa12.53□□□□□ -0.4
DEP1YAL013W MCM10P32354 571 aa12.53□□□□□ -0.4
DEP1YAL013W COS9P36034 407 aa12.53□□□□□ -0.4
DEP1YAL013W SHE2P36068 246 aaKnown RBP RIP-Chip data12.53□□□□□ -0.4not detected
DEP1YAL013W YBR137WP38276 179 aa12.53□□□□□ -0.4
Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms