RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 H0YC42 278 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 ANGPT1Q15389 498 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 CERKLQ49MI3 558 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-209ENST00000472056 SPATA4Q8NEY3 305 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 TSPOAP1O95153 1857 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 CCT8L1PA6NM43 557 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 MFSD14BQ5SR56 506 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 FAM193BQ96PV7 902 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-209ENST00000472056 MYL10Q9BUA6 226 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 TSSK1BQ9BXA7 367 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 ABCA9Q8IUA7 1624 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 TCP11X1B4DZS4 312 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 CCDC137Q6PK04 289 aaKnown RBP14.09□□□□□ -0.15
COL6A3-209ENST00000472056 TUBA8Q9NY65 449 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-209ENST00000472056 PCDHGB4Q9UN71 923 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 TESPA1A2RU30 521 aaPredicted RBP14.08□□□□□ -0.15
COL6A3-209ENST00000472056 FCGR1AP12314 374 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 SERPINB3P29508 390 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 RESTQ13127 1097 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 PTK2BQ14289 1009 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 RASGRP2Q7LDG7 609 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 CDKL3Q8IVW4 592 aaPredicted RBP14.08□□□□□ -0.15
COL6A3-209ENST00000472056 TRMT2AQ8IZ69 625 aaKnown RBP14.08□□□□□ -0.15
COL6A3-209ENST00000472056 RNF139Q8WU17 664 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 TGFBRAP1Q8WUH2 860 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 JARID2Q92833 1246 aaPredicted RBP14.08□□□□□ -0.15
COL6A3-209ENST00000472056 MAGED4Q96JG8 741 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 PSMC3IPQ9P2W1 217 aaPredicted RBP14.08□□□□□ -0.15
COL6A3-209ENST00000472056 ENOPH1Q9UHY7 261 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 USP17L12C9JPN9 530 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 USP17L21D6R901 530 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 ERICH1Q86X53 443 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 CASP10Q92851 521 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 OSBPL8Q9BZF1 889 aa14.08□□□□□ -0.15
COL6A3-209ENST00000472056 O00370 1275 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 FAR2Q96K12 515 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 KIAA1755Q5JYT7 1200 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 OTUD7BQ6GQQ9 843 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 MYLK4Q86YV6 388 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-209ENST00000472056 CEP170Q5SW79 1584 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 ANP32DO95626 131 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 FANCEQ9HB96 536 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 SSU72P8A0A1W2PR75 194 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 ITIH2P19823 946 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 INAQ16352 499 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 ATL2Q8NHH9 583 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 UHMK1Q8TAS1 419 aaKnown RBP14.08□□□□□ -0.16
COL6A3-209ENST00000472056 SH3TC2Q8TF17 1288 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 BFARQ9NZS9 450 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 FAM32AQ9Y421 112 aaKnown RBP14.08□□□□□ -0.16
COL6A3-209ENST00000472056 FAM47CQ5HY64 1035 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 DPP8Q6V1X1 898 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-209ENST00000472056 KANSL2Q9H9L4 492 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 HPCAL4Q9UM19 191 aa14.08□□□□□ -0.16
COL6A3-209ENST00000472056 SUPT3HO75486 399 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 CCND2P30279 289 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 SOX5P35711 763 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 TNFAIP2Q03169 654 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 CCDC85BQ15834 202 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 FRMD5Q7Z6J6 570 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 MRPL48Q96GC5 212 aaKnown RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 CLIC6Q96NY7 704 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 DHX36Q9H2U1 1008 aaKnown RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 PTH1RQ03431 593 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 RFWD2Q8NHY2 731 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 FRMD8P1Q9BZ68 369 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 GINM1Q9NU53 330 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 ARHGEF40Q8TER5 1519 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 PLA2G4BP0C869 781 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 EIF6P56537 245 aaKnown RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 SNX12Q9UMY4 172 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 GCP02774 474 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 CLK1P49759 484 aaKnown RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 CEP78Q5JTW2 689 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 ACAP3Q96P50 834 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 SFMBT1Q9UHJ3 866 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 ADAM30Q9UKF2 790 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 NBNO60934 754 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 RASGRF1Q13972 1273 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 TRIM71Q2Q1W2 868 aaKnown RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 ANKRD13CQ8N6S4 541 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 ADAM22Q9P0K1 906 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 CCDC88CQ9P219 2028 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 PNMA8CA0A1B0GUJ8 204 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 PCCAP05165 728 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 ICA1Q05084 483 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 AP1M1Q9BXS5 423 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 VPS33BQ9H267 617 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 ZFYVE1Q9HBF4 777 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 PARVAQ9NVD7 372 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 ADAMTS1Q9UHI8 967 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 CITO14578 2027 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 LOC102724159A0A0B4J2E5 919 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 WDR91A4D1P6 747 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 SH2B2O14492 632 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 RALBP11234 206 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 PWP2Q15269 919 aaKnown RBP14.07□□□□□ -0.16
COL6A3-209ENST00000472056 RRM2BQ7LG56 351 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 FAM167AQ96KS9 214 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms