RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W UGA1P17649 471 aa3.6□□□□□ -1.83
VPS28YPL065W YHR035WP38769 630 aa3.6□□□□□ -1.83
VPS28YPL065W LOH1P47055 219 aa3.6□□□□□ -1.83
VPS28YPL065W RNY1Q02933 434 aaKnown RBP3.6□□□□□ -1.83
VPS28YPL065W SPO19Q03029 223 aa3.6□□□□□ -1.83
VPS28YPL065W SNX41Q04053 625 aa3.6□□□□□ -1.83
VPS28YPL065W YDR018CQ12185 396 aa3.6□□□□□ -1.83
VPS28YPL065W MRPL23Q12487 163 aaPredicted RBP3.6□□□□□ -1.83
VPS28YPL065W PRM4Q12498 284 aa3.6□□□□□ -1.83
VPS28YPL065W YAL067W-AQ8TGK6 75 aa3.6□□□□□ -1.83
VPS28YPL065W TPI1P00942 248 aaKnown RBP3.59□□□□□ -1.83
VPS28YPL065W RAD7P06779 565 aa3.59□□□□□ -1.83
VPS28YPL065W GAL7P08431 366 aa3.59□□□□□ -1.83
VPS28YPL065W RPL5P26321 297 aaKnown RBP3.59□□□□□ -1.83
VPS28YPL065W CYM1P32898 989 aa3.59□□□□□ -1.83
VPS28YPL065W RPS0AP32905 252 aaKnown RBP3.59□□□□□ -1.83
VPS28YPL065W MRPS9P38120 278 aa3.59□□□□□ -1.83
VPS28YPL065W ECM34P38728 170 aa3.59□□□□□ -1.83
VPS28YPL065W HIT1P46973 164 aa3.59□□□□□ -1.83
VPS28YPL065W YGL185CP53100 379 aa3.59□□□□□ -1.83
VPS28YPL065W YGR266WP53326 701 aa3.59□□□□□ -1.83
VPS28YPL065W BIO4P53630 237 aa3.59□□□□□ -1.83
VPS28YPL065W YLR413WQ06689 675 aa3.59□□□□□ -1.83
VPS28YPL065W STE2D6VTK4 431 aa3.58□□□□□ -1.84
VPS28YPL065W TIP20P33891 701 aa3.58□□□□□ -1.84
VPS28YPL065W RPC25P35718 212 aa3.58□□□□□ -1.84
VPS28YPL065W SED5Q01590 340 aa3.58□□□□□ -1.84
VPS28YPL065W PIN3Q06449 215 aa3.58□□□□□ -1.84
VPS28YPL065W DTD1Q07648 150 aaKnown RBP3.58□□□□□ -1.84
VPS28YPL065W RPC40P07703 335 aaKnown RBP3.57□□□□□ -1.84
VPS28YPL065W FLO11P08640 1367 aa3.57□□□□□ -1.84
VPS28YPL065W GPI12P23797 304 aa3.57□□□□□ -1.84
VPS28YPL065W DBP7P36120 742 aaKnown RBP3.57□□□□□ -1.84
VPS28YPL065W SOP4P39543 234 aaPredicted RBP3.57□□□□□ -1.84
VPS28YPL065W MEP1P40260 492 aa3.57□□□□□ -1.84
VPS28YPL065W SLM1P40485 686 aa3.57□□□□□ -1.84
VPS28YPL065W INP1Q03694 420 aa3.57□□□□□ -1.84
VPS28YPL065W YMR244WQ04018 355 aa3.57□□□□□ -1.84
VPS28YPL065W APC9Q12107 265 aa3.57□□□□□ -1.84
VPS28YPL065W SIA1Q12212 622 aa3.57□□□□□ -1.84
VPS28YPL065W UTP23Q12339 254 aaKnown RBP3.57□□□□□ -1.84
VPS28YPL065W MRPL20P22354 195 aaPredicted RBP3.56□□□□□ -1.84
VPS28YPL065W PPQ1P32945 549 aa3.56□□□□□ -1.84
VPS28YPL065W SWD2P36104 329 aaPredicted RBP3.56□□□□□ -1.84
VPS28YPL065W YPC1P38298 316 aa3.56□□□□□ -1.84
VPS28YPL065W EFM1P38732 585 aa3.56□□□□□ -1.84
VPS28YPL065W YER184CP39961 794 aa3.56□□□□□ -1.84
VPS28YPL065W YFL012WP43580 148 aa3.56□□□□□ -1.84
VPS28YPL065W COX16P47081 118 aa3.56□□□□□ -1.84
VPS28YPL065W SDS23P53172 527 aa3.56□□□□□ -1.84
VPS28YPL065W FMP48P53233 369 aa3.56□□□□□ -1.84
VPS28YPL065W INP2Q03824 705 aa3.56□□□□□ -1.84
VPS28YPL065W APC4Q04601 652 aa3.56□□□□□ -1.84
VPS28YPL065W ERV41Q04651 352 aa3.56□□□□□ -1.84
VPS28YPL065W YIL002W-AQ3E7Z5 69 aa3.56□□□□□ -1.84
VPS28YPL065W RPS19AP07280 144 aaKnown RBP3.55□□□□□ -1.84
VPS28YPL065W RPS19BP07281 144 aaPredicted RBP3.55□□□□□ -1.84
VPS28YPL065W MEK1P24719 497 aaPredicted RBP3.55□□□□□ -1.84
VPS28YPL065W CSM1P25651 190 aa3.55□□□□□ -1.84
VPS28YPL065W INO2P26798 304 aa3.55□□□□□ -1.84
VPS28YPL065W RFT1P38206 574 aaPredicted RBP3.55□□□□□ -1.84
VPS28YPL065W YMR262WP38430 313 aa3.55□□□□□ -1.84
VPS28YPL065W EGD1Q02642 157 aaKnown RBP3.55□□□□□ -1.84
VPS28YPL065W BI3Q9ZZW7 517 aa3.55□□□□□ -1.84
VPS28YPL065W RPL31AP0C2H8 113 aaKnown RBP3.54□□□□□ -1.84
VPS28YPL065W YKL187CP34231 750 aa3.54□□□□□ -1.84
VPS28YPL065W MCH2P36032 473 aa3.54□□□□□ -1.84
VPS28YPL065W CTM1P38818 585 aa3.54□□□□□ -1.84
VPS28YPL065W YNR066CP53752 436 aa3.54□□□□□ -1.84
VPS28YPL065W ECM11Q04110 302 aa3.54□□□□□ -1.84
VPS28YPL065W YBL111CQ3E7Y5 667 aa3.54□□□□□ -1.84
VPS28YPL065W IZH4Q99393 312 aa3.54□□□□□ -1.84
VPS28YPL065W AUS1Q08409 1394 aa3.53□□□□□ -1.84
VPS28YPL065W RPL16BP26785 198 aaKnown RBP3.53□□□□□ -1.84
VPS28YPL065W ZRT3P34240 503 aa3.53□□□□□ -1.84
VPS28YPL065W YKL070WP36087 169 aa3.53□□□□□ -1.84
VPS28YPL065W YBR062CP38239 180 aa3.53□□□□□ -1.84
VPS28YPL065W RRG9P40156 214 aa3.53□□□□□ -1.84
VPS28YPL065W COQ5P49017 307 aa3.53□□□□□ -1.84
VPS28YPL065W FLC3P53121 802 aa3.53□□□□□ -1.84
VPS28YPL065W YNL050CP53952 270 aa3.53□□□□□ -1.84
VPS28YPL065W UTP15Q04305 513 aaKnown RBP3.53□□□□□ -1.84
VPS28YPL065W YPL245WQ12179 454 aaKnown RBP3.53□□□□□ -1.84
VPS28YPL065W ERP3Q12403 225 aa3.53□□□□□ -1.84
VPS28YPL065W COX10P21592 462 aa3.52□□□□□ -1.85
VPS28YPL065W VPS45P38932 577 aa3.52□□□□□ -1.85
VPS28YPL065W GDS1P41913 522 aa3.52□□□□□ -1.85
VPS28YPL065W GTO1P48239 356 aa3.52□□□□□ -1.85
VPS28YPL065W UBC13P52490 153 aa3.52□□□□□ -1.85
VPS28YPL065W MND1P53102 219 aa3.52□□□□□ -1.85
VPS28YPL065W YGR067CP53243 804 aa3.52□□□□□ -1.85
VPS28YPL065W YNL260CP53846 198 aa3.52□□□□□ -1.85
VPS28YPL065W YLR446WQ06204 433 aa3.52□□□□□ -1.85
VPS28YPL065W FAB1P34756 2278 aa3.51□□□□□ -1.85
VPS28YPL065W TDH3P00359 332 aaKnown RBP RIP-Chip data3.51□□□□□ -1.85not detected
VPS28YPL065W OM45P16547 393 aa3.51□□□□□ -1.85
VPS28YPL065W RTT105P40063 208 aa3.51□□□□□ -1.85
VPS28YPL065W SWC4P53201 476 aa3.51□□□□□ -1.85
VPS28YPL065W GMC1Q04399 608 aa3.51□□□□□ -1.85
VPS28YPL065W ASR1Q06834 288 aa3.51□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms