RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	MET17	P06106	444 aa		13.9	□□□□□ -0.18
CCC1	YLR220W	MDH3	P32419	343 aa	Known RBP RIP-Chip data	13.9	□□□□□ -0.18	not detected
CCC1	YLR220W	PAD1	P33751	242 aa	Known RBP RIP-Chip data	13.9	□□□□□ -0.18	not detected
CCC1	YLR220W	MLH1	P38920	769 aa		13.9	□□□□□ -0.18
CCC1	YLR220W	SHO1	P40073	367 aa		13.9	□□□□□ -0.18
CCC1	YLR220W	MNN5	P46982	586 aa		13.9	□□□□□ -0.18
CCC1	YLR220W	PRY1	P47032	299 aa		13.9	□□□□□ -0.18
CCC1	YLR220W	YGR126W	P53274	230 aa		13.9	□□□□□ -0.18
CCC1	YLR220W	RRN9	P53437	365 aa		13.9	□□□□□ -0.18
CCC1	YLR220W	MNT4	P53745	580 aa		13.9	□□□□□ -0.18
CCC1	YLR220W	YPR147C	Q06522	304 aa	Known RBP	13.9	□□□□□ -0.18
CCC1	YLR220W	HRT1	Q08273	121 aa		13.9	□□□□□ -0.18
CCC1	YLR220W	NDC1	P32500	655 aa		13.89	□□□□□ -0.19
CCC1	YLR220W	HIS6	P40545	261 aa		13.89	□□□□□ -0.19
CCC1	YLR220W	OGG1	P53397	376 aa	Predicted RBP	13.89	□□□□□ -0.19
CCC1	YLR220W	YMR087W	Q04299	284 aa		13.89	□□□□□ -0.19
CCC1	YLR220W	VBA4	Q04602	768 aa	Known RBP	13.89	□□□□□ -0.19
CCC1	YLR220W	GSH2	Q08220	491 aa		13.89	□□□□□ -0.19
CCC1	YLR220W	PDX1	P16451	410 aa		13.88	□□□□□ -0.19
CCC1	YLR220W	MRPS28	P21771	286 aa		13.88	□□□□□ -0.19
CCC1	YLR220W	APE4	P38821	490 aa		13.88	□□□□□ -0.19
CCC1	YLR220W	AIM10	P39965	576 aa	Known RBP	13.88	□□□□□ -0.19
CCC1	YLR220W	SSY5	P47002	699 aa		13.88	□□□□□ -0.19
CCC1	YLR220W	IPP1	P00817	287 aa	Known RBP	13.87	□□□□□ -0.19
CCC1	YLR220W	MET2	P08465	486 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	UTR1	P21373	530 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	YCL002C	P25565	263 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	CHK1	P38147	527 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	APD1	P38281	316 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	YER184C	P39961	794 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	BUR6	P40096	142 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	RFC4	P40339	323 aa	Known RBP	13.87	□□□□□ -0.19
CCC1	YLR220W	FIN1	Q03898	291 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	LSO1	Q3E827	93 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	VCX1	Q99385	411 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	Q0144	Q9ZZW2	109 aa		13.87	□□□□□ -0.19
CCC1	YLR220W	YAL064W-B	O13512	126 aa		13.86	□□□□□ -0.19
CCC1	YLR220W	GAS1	P22146	559 aa	Known RBP	13.86	□□□□□ -0.19
CCC1	YLR220W	MAL32	P38158	584 aa		13.86	□□□□□ -0.19
CCC1	YLR220W	YHR035W	P38769	630 aa		13.86	□□□□□ -0.19
CCC1	YLR220W	YIL169C	P40442	995 aa		13.86	□□□□□ -0.19
CCC1	YLR220W	RPN14	P53196	417 aa		13.86	□□□□□ -0.19
CCC1	YLR220W	YGR066C	P53242	292 aa		13.86	□□□□□ -0.19
CCC1	YLR220W	MAL12	P53341	584 aa		13.86	□□□□□ -0.19
CCC1	YLR220W	NIP7	Q08962	181 aa	Known RBP	13.86	□□□□□ -0.19
CCC1	YLR220W	YDL176W	Q12027	708 aa		13.86	□□□□□ -0.19
CCC1	YLR220W	THP3	Q12049	470 aa	Known RBP	13.86	□□□□□ -0.19
CCC1	YLR220W	SFG1	Q12507	346 aa		13.86	□□□□□ -0.19
CCC1	YLR220W	SEC12	P11655	471 aa		13.85	□□□□□ -0.19
CCC1	YLR220W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	13.85	□□□□□ -0.19	not detected
CCC1	YLR220W	MDH2	P22133	377 aa		13.85	□□□□□ -0.19
CCC1	YLR220W	THI4	P32318	326 aa		13.85	□□□□□ -0.19
CCC1	YLR220W	VBA2	P38358	474 aa	Known RBP	13.85	□□□□□ -0.19
CCC1	YLR220W	POP1	P41812	875 aa		13.85	□□□□□ -0.19
CCC1	YLR220W	SAM37	P50110	327 aa		13.85	□□□□□ -0.19
CCC1	YLR220W	SRP1	Q02821	542 aa	Known RBP	13.85	□□□□□ -0.19
CCC1	YLR220W	FDC1	Q03034	503 aa		13.85	□□□□□ -0.19
CCC1	YLR220W	TAZ1	Q06510	381 aa		13.85	□□□□□ -0.19
CCC1	YLR220W	PBS2	P08018	668 aa		13.84	□□□□□ -0.19
CCC1	YLR220W	NIT2	P47016	307 aa		13.84	□□□□□ -0.19
CCC1	YLR220W	APM1	Q00776	475 aa	Predicted RBP	13.84	□□□□□ -0.19
CCC1	YLR220W	NUP49	Q02199	472 aa		13.84	□□□□□ -0.19
CCC1	YLR220W	YDL218W	Q07629	317 aa		13.84	□□□□□ -0.19
CCC1	YLR220W	YPL272C	Q08984	517 aa		13.84	□□□□□ -0.19
CCC1	YLR220W	RAS1	P01119	309 aa		13.83	□□□□□ -0.2
CCC1	YLR220W	YKR015C	P36111	568 aa		13.83	□□□□□ -0.2
CCC1	YLR220W	MGE1	P38523	228 aa		13.83	□□□□□ -0.2
CCC1	YLR220W	NAS2	P40555	220 aa		13.83	□□□□□ -0.2
CCC1	YLR220W	SOK2	P53438	785 aa	Predicted RBP	13.83	□□□□□ -0.2
CCC1	YLR220W	YMR315W	Q04869	349 aa	Known RBP	13.83	□□□□□ -0.2
CCC1	YLR220W	MRPL51	Q06090	140 aa	Predicted RBP	13.83	□□□□□ -0.2
CCC1	YLR220W	YLR346C	Q06139	101 aa		13.83	□□□□□ -0.2
CCC1	YLR220W	CBP6	P07253	162 aa	Predicted RBP	13.82	□□□□□ -0.2
CCC1	YLR220W	STE12	P13574	688 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	ERG9	P29704	444 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	YME2	P32843	850 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	ECT1	P33412	323 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	COS9	P36034	407 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	SHE1	P38200	338 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	AMN1	P38285	549 aa	Predicted RBP	13.82	□□□□□ -0.2
CCC1	YLR220W	MSY1	P48527	492 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	HRI1	Q05905	244 aa	Known RBP	13.82	□□□□□ -0.2
CCC1	YLR220W	GAS2	Q06135	555 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	NEJ1	Q06148	342 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	YLR173W	Q06247	608 aa		13.82	□□□□□ -0.2
CCC1	YLR220W	NUM1	Q00402	2748 aa		13.81	□□□□□ -0.2
CCC1	YLR220W	FPS1	P23900	669 aa		13.81	□□□□□ -0.2
CCC1	YLR220W	MCM10	P32354	571 aa		13.81	□□□□□ -0.2
CCC1	YLR220W	IES5	P40060	125 aa		13.81	□□□□□ -0.2
CCC1	YLR220W	DDI1	P40087	428 aa		13.81	□□□□□ -0.2
CCC1	YLR220W	SFH5	P47008	294 aa		13.81	□□□□□ -0.2
CCC1	YLR220W	BRR6	P53062	197 aa		13.81	□□□□□ -0.2
CCC1	YLR220W	NUP116	Q02630	1113 aa		13.81	□□□□□ -0.2
CCC1	YLR220W	MIM1	Q08176	113 aa		13.81	□□□□□ -0.2
CCC1	YLR220W	RPL5	P26321	297 aa	Known RBP	13.8	□□□□□ -0.2
CCC1	YLR220W	RPS5	P26783	225 aa	Known RBP	13.8	□□□□□ -0.2
CCC1	YLR220W	FUN19	P28003	413 aa	Predicted RBP	13.8	□□□□□ -0.2
CCC1	YLR220W	CAM1	P29547	415 aa	Known RBP	13.8	□□□□□ -0.2
CCC1	YLR220W	AIM3	P38266	947 aa	Known RBP	13.8	□□□□□ -0.2
CCC1	YLR220W	UBX6	P47049	396 aa		13.8	□□□□□ -0.2

Retrieved 100 of 5,963 RNA–protein pairs in 18 ms