RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	YHR035W	P38769	630 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	LIA1	P47120	325 aa	Known RBP	4.13	□□□□□ -1.75
DEG1	YFL001W	SEH1	P53011	349 aa	Known RBP	4.13	□□□□□ -1.75
DEG1	YFL001W	REX2	P54964	269 aa	Known RBP	4.13	□□□□□ -1.75
DEG1	YFL001W	IRC4	Q03036	179 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	TRM82	Q03774	444 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	PBA1	Q05778	276 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	YLR173W	Q06247	608 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	YOR387C	Q08910	206 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	YPQ1	Q12010	308 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	APC9	Q12107	265 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	RPN6	Q12377	434 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	SAL1	D6W196	494 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	RPL23A	P0CX41	137 aa	Known RBP	4.12	□□□□□ -1.75
DEG1	YFL001W	RPL23B	P0CX42	137 aa	Known RBP	4.12	□□□□□ -1.75
DEG1	YFL001W	GCG1	P32656	232 aa	Known RBP	4.12	□□□□□ -1.75
DEG1	YFL001W	SWD2	P36104	329 aa	Predicted RBP	4.12	□□□□□ -1.75
DEG1	YFL001W	RCK2	P38623	610 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	SLM1	P40485	686 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	DFG10	P40526	253 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	YNL320W	P42840	284 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	AGP3	P43548	558 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	CLD1	P53264	445 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	HCH1	P53834	153 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	YMR010W	Q03687	405 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	RIF2	Q06208	395 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	BER1	Q06688	274 aa	Known RBP	4.12	□□□□□ -1.75
DEG1	YFL001W	DDC1	Q08949	612 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	TY3A-G	Q12173	290 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	TIP41	Q12199	356 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	FRE8	Q12209	686 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	RUD3	Q12234	484 aa	Known RBP	4.12	□□□□□ -1.75
DEG1	YFL001W	YOL107W	Q12239	342 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	TY3A-I	Q99219	290 aa		4.12	□□□□□ -1.75
DEG1	YFL001W	ATP6	P00854	259 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	NAM2	P11325	894 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	MEI5	P32489	222 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	ZRT1	P32804	376 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	NDT80	P38830	627 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	PTI1	P39927	425 aa	Predicted RBP	4.11	□□□□□ -1.75
DEG1	YFL001W	PMT4	P46971	762 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	MRX5	P47007	382 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	KAP114	P53067	1004 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	BOP2	Q06150	570 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	GMC2	Q06201	188 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	CMS1	Q07897	291 aa	Known RBP	4.11	□□□□□ -1.75
DEG1	YFL001W	YLR012C	Q07927	99 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	NDD1	Q08887	554 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	MED4	Q12343	284 aa		4.11	□□□□□ -1.75
DEG1	YFL001W	HHF1	P02309	103 aa	Known RBP	4.1	□□□□□ -1.75
DEG1	YFL001W	REP1	P03871	373 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	HPR1	P17629	752 aa	Known RBP	4.1	□□□□□ -1.75
DEG1	YFL001W	SKG6	P32900	734 aa	Predicted RBP	4.1	□□□□□ -1.75
DEG1	YFL001W	COS9	P36034	407 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	ANR2	P36090	516 aa	Predicted RBP	4.1	□□□□□ -1.75
DEG1	YFL001W	LSM12	P38828	187 aa	Known RBP	4.1	□□□□□ -1.75
DEG1	YFL001W	PTH1	P38876	190 aa	Known RBP	4.1	□□□□□ -1.75
DEG1	YFL001W	REE1	P40893	198 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	YAR1	P46683	200 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	BIO3	P50277	480 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	SHY1	P53266	389 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	SED5	Q01590	340 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	ELP3	Q02908	557 aa	Known RBP	4.1	□□□□□ -1.75
DEG1	YFL001W	COX20	Q04935	205 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	YHC1	Q05900	231 aa	Known RBP	4.1	□□□□□ -1.75
DEG1	YFL001W	MFG1	Q07684	458 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	MLP1	Q02455	1875 aa	Known RBP	4.1	□□□□□ -1.75
DEG1	YFL001W	RSF2	P46974	1380 aa		4.1	□□□□□ -1.75
DEG1	YFL001W	SSK22	P25390	1331 aa	Predicted RBP	4.09	□□□□□ -1.75
DEG1	YFL001W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
DEG1	YFL001W	COX2	P00410	251 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	MSF1	P08425	469 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	SPT15	P13393	240 aa	Known RBP	4.09	□□□□□ -1.75
DEG1	YFL001W	YSR3	P23501	404 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	RVS161	P25343	265 aa	Known RBP	4.09	□□□□□ -1.75
DEG1	YFL001W	CSE2	P33308	149 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	YBL059W	P34224	193 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	TAE1	P38340	232 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	RIP-Chip
DEG1	YFL001W	LSB1	P53281	241 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	YNL134C	P53912	376 aa	Known RBP	4.09	□□□□□ -1.75
DEG1	YFL001W	SUR7	P54003	302 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	ARV1	Q06541	321 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	GPN3	Q06543	272 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	RDL2	Q08742	149 aa	Known RBP	4.09	□□□□□ -1.75
DEG1	YFL001W	FDH1	Q08911	376 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	JID1	Q12350	301 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	ERP3	Q12403	225 aa		4.09	□□□□□ -1.75
DEG1	YFL001W	RPO41	P13433	1351 aa	Known RBP	4.09	□□□□□ -1.76
DEG1	YFL001W	AUS1	Q08409	1394 aa		4.09	□□□□□ -1.76
DEG1	YFL001W	RRP5	Q05022	1729 aa	Known RBP	4.08	□□□□□ -1.76
DEG1	YFL001W	POL30	P15873	258 aa	Known RBP	4.08	□□□□□ -1.76
DEG1	YFL001W	ARO2	P28777	376 aa	Known RBP	4.08	□□□□□ -1.76
DEG1	YFL001W	IMP3	P32899	183 aa	Predicted RBP	4.08	□□□□□ -1.76
DEG1	YFL001W	RFS1	P38234	210 aa	Known RBP	4.08	□□□□□ -1.76
DEG1	YFL001W	PRM9	P39551	298 aa		4.08	□□□□□ -1.76
DEG1	YFL001W	EGT2	P42835	1041 aa		4.08	□□□□□ -1.76
DEG1	YFL001W	YFR057W	P43625	151 aa		4.08	□□□□□ -1.76
DEG1	YFL001W	BNS1	P50084	137 aa		4.08	□□□□□ -1.76
DEG1	YFL001W	YPL077C	Q02831	240 aa		4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 85.6 ms