RNA–Protein interactions for RNA: YDR498C

SEC20, Transcript of Membrane glycoprotein v-SNARE, yeast

Gene SEC20, Length 1,152 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC20	YDR498C	SEI1	Q06058	285 aa		5.21	□□□□□ -1.58
SEC20	YDR498C	PHO92	Q06390	306 aa		5.21	□□□□□ -1.58
SEC20	YDR498C	YPR127W	Q06494	345 aa		5.21	□□□□□ -1.58
SEC20	YDR498C	RRP9	Q06506	573 aa	Known RBP	5.21	□□□□□ -1.58
SEC20	YDR498C	YPR172W	Q06608	200 aa		5.21	□□□□□ -1.58
SEC20	YDR498C	SYO1	Q07395	620 aa		5.21	□□□□□ -1.58
SEC20	YDR498C	NBA1	Q08229	501 aa	Known RBP	5.21	□□□□□ -1.58
SEC20	YDR498C	FMP40	Q08968	688 aa	Predicted RBP	5.21	□□□□□ -1.58
SEC20	YDR498C	ATG41	Q12048	136 aa		5.21	□□□□□ -1.58
SEC20	YDR498C	RTK1	Q12100	620 aa	Predicted RBP	5.21	□□□□□ -1.58
SEC20	YDR498C	TIR4	Q12218	487 aa	Predicted RBP	5.21	□□□□□ -1.58
SEC20	YDR498C	YOL114C	Q12322	202 aa		5.21	□□□□□ -1.58
SEC20	YDR498C	PCL9	Q12477	304 aa		5.21	□□□□□ -1.58
SEC20	YDR498C	PSF1	Q12488	208 aa		5.21	□□□□□ -1.58
SEC20	YDR498C	PHO80	P20052	293 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	HSP30	P25619	332 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	HSP150	P32478	413 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	CLG1	P35190	452 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	RSM22	P36056	628 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	BET3	P36149	193 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	DTR1	P38125	572 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	MAL32	P38158	584 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	YBR137W	P38276	179 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	MBA1	P38300	278 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	RPS20	P38701	121 aa	Known RBP	5.2	□□□□□ -1.58
SEC20	YDR498C	YHR210C	P38893	341 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	TRM9	P49957	279 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	SPT20	P50875	604 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	YGL101W	P53144	215 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	ERV29	P53337	310 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	MAL12	P53341	584 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	DML1	Q03652	475 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	URC2	Q04411	772 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	PAL1	Q05518	499 aa	Known RBP	5.2	□□□□□ -1.58
SEC20	YDR498C	BUR2	Q05949	395 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	SNT309	Q06091	175 aa	Predicted RBP	5.2	□□□□□ -1.58
SEC20	YDR498C	NMA1	Q06178	401 aa	Known RBP	5.2	□□□□□ -1.58
SEC20	YDR498C	YOL073C	Q08232	322 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	AVO1	Q08236	1176 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	HRT1	Q08273	121 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	RDR1	Q08904	546 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	GUP2	Q08929	609 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	SKM1	Q12469	655 aa		5.2	□□□□□ -1.58
SEC20	YDR498C	CDC31	P06704	161 aa	Known RBP	5.19	□□□□□ -1.58
SEC20	YDR498C	GRX2	P17695	143 aa	Known RBP	5.19	□□□□□ -1.58
SEC20	YDR498C	RPB8	P20436	146 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	YCR102C	P25608	368 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	5.19	□□□□□ -1.58	not detected
SEC20	YDR498C	ECT1	P33412	323 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	MTC2	P34246	357 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	VPS51	P36116	164 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	NSG1	P38837	291 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	SIT1	P39980	628 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	QDR1	P40475	563 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	HXT9	P40885	567 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	PMT6	P42934	759 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	IRC18	P47056	224 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	DIE2	P50076	525 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	COS10	P52924	374 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	SEH1	P53011	349 aa	Known RBP	5.19	□□□□□ -1.58
SEC20	YDR498C	PAU12	P53343	120 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	HXT11	P54862	567 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	YMR210W	Q03649	449 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	SNO4	Q04902	237 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	MFB1	Q04922	465 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	DIC1	Q06143	298 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	TPO3	Q06451	622 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	YEH1	Q07804	573 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	NOP12	Q08208	459 aa	Known RBP	5.19	□□□□□ -1.58
SEC20	YDR498C	HSP33	Q08914	237 aa	Known RBP	5.19	□□□□□ -1.58
SEC20	YDR498C	HSP32	Q08992	237 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	BTS1	Q12051	335 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	YOR214C	Q12282	236 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	YDR061W	Q12298	539 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	FRE7	Q12333	620 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	FRE6	Q12473	712 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	YLR099W-A	Q3E798	87 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	YBL113C	Q7M4S9	792 aa		5.19	□□□□□ -1.58
SEC20	YDR498C	CYC1	P00044	109 aa	Predicted RBP	5.18	□□□□□ -1.58
SEC20	YDR498C	CDC9	P04819	755 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	YSF3	P0C074	85 aa	Predicted RBP	5.18	□□□□□ -1.58
SEC20	YDR498C	RPS18A	P0CX55	146 aa	Known RBP	5.18	□□□□□ -1.58
SEC20	YDR498C	RPS18B	P0CX56	146 aa	Predicted RBP	5.18	□□□□□ -1.58
SEC20	YDR498C	EXG1	P23776	448 aa	Known RBP	5.18	□□□□□ -1.58
SEC20	YDR498C	ATG22	P25568	528 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	PBN1	P25580	416 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	5.18	□□□□□ -1.58	not detected
SEC20	YDR498C	PPQ1	P32945	549 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	ANR2	P36090	516 aa	Predicted RBP	5.18	□□□□□ -1.58
SEC20	YDR498C	MRPL15	P36523	253 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	PAU24	P38155	120 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	HIS6	P40545	261 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	FET5	P43561	622 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	LCL3	P53153	274 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	SAY1	P53324	424 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	MPP6	P53725	186 aa	Predicted RBP	5.18	□□□□□ -1.58
SEC20	YDR498C	MNT4	P53745	580 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	MRPL13	Q02204	264 aa		5.18	□□□□□ -1.58
SEC20	YDR498C	NOG1	Q02892	647 aa	Known RBP	5.18	□□□□□ -1.58
SEC20	YDR498C	ORM2	Q06144	216 aa		5.18	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms