RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C CLP1Q08685 445 aaPredicted RBP1.21□□□□□ -2.22
PCF11YDR228C YCH1P42937 148 aa1.2□□□□□ -2.22
PCF11YDR228C MLC1P53141 149 aa1.2□□□□□ -2.22
PCF11YDR228C TPC1P53257 314 aa1.2□□□□□ -2.22
PCF11YDR228C ACT1P60010 375 aaKnown RBP1.2□□□□□ -2.22
PCF11YDR228C RGM1Q00453 211 aa1.2□□□□□ -2.22
PCF11YDR228C AIM33Q04516 312 aa1.2□□□□□ -2.22
PCF11YDR228C SPH1Q06160 661 aa1.2□□□□□ -2.22
PCF11YDR228C YFH1Q07540 174 aa1.2□□□□□ -2.22
PCF11YDR228C SMC6Q12749 1114 aa1.2□□□□□ -2.22
PCF11YDR228C FSH3Q99369 266 aa1.2□□□□□ -2.22
PCF11YDR228C SNF6P18888 332 aa1.2□□□□□ -2.22
PCF11YDR228C YPS1P32329 569 aa1.2□□□□□ -2.22
PCF11YDR228C YKL187CP34231 750 aa1.2□□□□□ -2.22
PCF11YDR228C GYL1Q04322 720 aa1.2□□□□□ -2.22
PCF11YDR228C ARR1Q06596 294 aa1.2□□□□□ -2.22
PCF11YDR228C CTA1P15202 515 aa1.19□□□□□ -2.22
PCF11YDR228C KRE1P17260 313 aa1.19□□□□□ -2.22
PCF11YDR228C RSA4P25382 515 aaKnown RBP1.19□□□□□ -2.22
PCF11YDR228C PCH2P38126 564 aa1.19□□□□□ -2.22
PCF11YDR228C RFT1P38206 574 aaPredicted RBP1.19□□□□□ -2.22
PCF11YDR228C YIL054WP40524 105 aa1.19□□□□□ -2.22
PCF11YDR228C YNL320WP42840 284 aa1.19□□□□□ -2.22
PCF11YDR228C EPL1P43572 832 aa1.19□□□□□ -2.22
PCF11YDR228C BUD13P46947 266 aaPredicted RBP1.19□□□□□ -2.22
PCF11YDR228C FMP48P53233 369 aa1.19□□□□□ -2.22
PCF11YDR228C VPS9P54787 451 aa1.19□□□□□ -2.22
PCF11YDR228C RRB1Q04225 511 aaKnown RBP1.19□□□□□ -2.22
PCF11YDR228C DAP2P18962 818 aa1.18□□□□□ -2.22
PCF11YDR228C CKI1P20485 582 aa1.18□□□□□ -2.22
PCF11YDR228C MRPS5P33759 307 aa1.18□□□□□ -2.22
PCF11YDR228C PXA2P34230 853 aa1.18□□□□□ -2.22
PCF11YDR228C YKR032WP36127 104 aa1.18□□□□□ -2.22
PCF11YDR228C YBL028CP38202 106 aa1.18□□□□□ -2.22
PCF11YDR228C YER084WP40057 128 aa1.18□□□□□ -2.22
PCF11YDR228C SDS23P53172 527 aa1.18□□□□□ -2.22
PCF11YDR228C CAX4P53223 239 aa1.18□□□□□ -2.22
PCF11YDR228C PEX27Q08580 376 aa1.18□□□□□ -2.22
PCF11YDR228C ARF2P19146 181 aaKnown RBP1.18□□□□□ -2.22
PCF11YDR228C MDL1P33310 695 aa1.18□□□□□ -2.22
PCF11YDR228C CTM1P38818 585 aa1.18□□□□□ -2.22
PCF11YDR228C DSE1P40077 573 aa1.18□□□□□ -2.22
PCF11YDR228C SLM1P40485 686 aa1.18□□□□□ -2.22
PCF11YDR228C YPL080CQ02826 108 aa1.18□□□□□ -2.22
PCF11YDR228C PEX30Q06169 523 aa1.18□□□□□ -2.22
PCF11YDR228C FEX1Q08913 375 aa1.18□□□□□ -2.22
PCF11YDR228C FEX2Q08991 375 aa1.18□□□□□ -2.22
PCF11YDR228C TRM10Q12400 293 aa1.18□□□□□ -2.22
PCF11YDR228C SFG1Q12507 346 aa1.18□□□□□ -2.22
PCF11YDR228C UTR1P21373 530 aa1.17□□□□□ -2.22
PCF11YDR228C ERG9P29704 444 aa1.17□□□□□ -2.22
PCF11YDR228C ASP1P38986 381 aaPredicted RBP1.17□□□□□ -2.22
PCF11YDR228C PMT4P46971 762 aa1.17□□□□□ -2.22
PCF11YDR228C MNN5P46982 586 aa1.17□□□□□ -2.22
PCF11YDR228C NBP1P52919 319 aaPredicted RBP1.17□□□□□ -2.22
PCF11YDR228C YGL118CP53132 145 aa1.17□□□□□ -2.22
PCF11YDR228C NAT4Q04751 285 aa1.17□□□□□ -2.22
PCF11YDR228C MXR2P25566 168 aa1.16□□□□□ -2.22
PCF11YDR228C ITR2P30606 609 aa1.16□□□□□ -2.22
PCF11YDR228C YBL081WP38180 368 aaKnown RBP1.16□□□□□ -2.22
PCF11YDR228C SNL1P40548 159 aa1.16□□□□□ -2.22
PCF11YDR228C YNL095CP53932 642 aa1.16□□□□□ -2.22
PCF11YDR228C SMP3Q04174 516 aa1.16□□□□□ -2.22
PCF11YDR228C MIM1Q08176 113 aa1.16□□□□□ -2.22
PCF11YDR228C RAD1P06777 1100 aa1.16□□□□□ -2.22
PCF11YDR228C FAA1P30624 700 aaKnown RBP1.16□□□□□ -2.22
PCF11YDR228C VMA8P32610 256 aaKnown RBP1.16□□□□□ -2.22
PCF11YDR228C BUD2P33314 1104 aa1.16□□□□□ -2.22
PCF11YDR228C PEX32P38292 413 aa1.16□□□□□ -2.22
PCF11YDR228C MMS21P38632 267 aa1.16□□□□□ -2.22
PCF11YDR228C SMF2P38778 549 aa1.16□□□□□ -2.22
PCF11YDR228C LRP1P38801 184 aaKnown RBP1.16□□□□□ -2.22
PCF11YDR228C YHR122WP38829 231 aa1.16□□□□□ -2.22
PCF11YDR228C HIT1P46973 164 aa1.16□□□□□ -2.22
PCF11YDR228C MPS2P53159 387 aa1.16□□□□□ -2.22
PCF11YDR228C YDR114CQ04597 100 aa1.16□□□□□ -2.22
PCF11YDR228C MED6P38782 295 aa1.15□□□□□ -2.23
PCF11YDR228C YMR134WP40207 237 aa1.15□□□□□ -2.23
PCF11YDR228C YJL055WP47044 245 aa1.15□□□□□ -2.23
PCF11YDR228C YNL040WP53960 456 aaPredicted RBP1.15□□□□□ -2.23
PCF11YDR228C CDD1Q06549 142 aa1.15□□□□□ -2.23
PCF11YDR228C IES3Q12345 250 aa1.15□□□□□ -2.23
PCF11YDR228C ERP3Q12403 225 aa1.15□□□□□ -2.23
PCF11YDR228C MRX4Q12467 430 aa1.15□□□□□ -2.23
PCF11YDR228C PRM4Q12498 284 aa1.15□□□□□ -2.23
PCF11YDR228C MHP1P43638 1398 aa1.15□□□□□ -2.23
PCF11YDR228C REP1P03871 373 aa1.14□□□□□ -2.23
PCF11YDR228C THR4P16120 514 aaKnown RBP1.14□□□□□ -2.23
PCF11YDR228C ECO1P43605 281 aa1.14□□□□□ -2.23
PCF11YDR228C YHC3P47040 408 aa1.14□□□□□ -2.23
PCF11YDR228C UFD1P53044 361 aa1.14□□□□□ -2.23
PCF11YDR228C YNR068CP53754 272 aa1.14□□□□□ -2.23
PCF11YDR228C UTP6Q02354 440 aaKnown RBP1.14□□□□□ -2.23
PCF11YDR228C TFC7Q12415 435 aa1.14□□□□□ -2.23
PCF11YDR228C MRPL20P22354 195 aaPredicted RBP1.14□□□□□ -2.23
PCF11YDR228C DCC1P25559 380 aa1.14□□□□□ -2.23
PCF11YDR228C CSE1P33307 960 aa1.14□□□□□ -2.23
PCF11YDR228C APC5Q08683 685 aa1.14□□□□□ -2.23
PCF11YDR228C PAR32Q12515 295 aaKnown RBP1.14□□□□□ -2.23
PCF11YDR228C CDC42P19073 191 aa1.13□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms