RNA–Protein interactions for RNA: YCR097W

HMRA1, Transcript of Silenced copy of a1 at HMR, yeast

Gene HMRA1, Length 381 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HMRA1	YCR097W	ACT1	P60010	375 aa	Known RBP	0.77	□□□□□ -2.29
HMRA1	YCR097W	YDR541C	Q03049	344 aa		0.77	□□□□□ -2.29
HMRA1	YCR097W	DCR2	Q05924	578 aa		0.77	□□□□□ -2.29
HMRA1	YCR097W	NDL1	Q06568	189 aa		0.77	□□□□□ -2.29
HMRA1	YCR097W	UAF30	Q08747	228 aa		0.77	□□□□□ -2.29
HMRA1	YCR097W	TAF10	Q12030	206 aa		0.77	□□□□□ -2.29
HMRA1	YCR097W	CSE1	P33307	960 aa		0.76	□□□□□ -2.29
HMRA1	YCR097W	YLR287C	Q05881	355 aa		0.76	□□□□□ -2.29
HMRA1	YCR097W	TIM22	Q12328	207 aa		0.76	□□□□□ -2.29
HMRA1	YCR097W	YOL163W	P0CF20	169 aa		0.75	□□□□□ -2.29
HMRA1	YCR097W	DAP2	P18962	818 aa		0.75	□□□□□ -2.29
HMRA1	YCR097W	YHR177W	P38867	453 aa		0.75	□□□□□ -2.29
HMRA1	YCR097W	DSE1	P40077	573 aa		0.75	□□□□□ -2.29
HMRA1	YCR097W	FCY21	P40039	528 aa		0.74	□□□□□ -2.29
HMRA1	YCR097W	YMR166C	Q03829	368 aa		0.74	□□□□□ -2.29
HMRA1	YCR097W	ERB1	Q04660	807 aa	Known RBP	0.74	□□□□□ -2.29
HMRA1	YCR097W	TRM10	Q12400	293 aa		0.74	□□□□□ -2.29
HMRA1	YCR097W	PRE7	P23724	241 aa	Known RBP	0.73	□□□□□ -2.29
HMRA1	YCR097W	SCO1	P23833	295 aa		0.73	□□□□□ -2.29
HMRA1	YCR097W	VAM7	P32912	316 aa		0.73	□□□□□ -2.29
HMRA1	YCR097W	KAP104	P38217	918 aa	Known RBP	0.73	□□□□□ -2.29
HMRA1	YCR097W	MNL1	P38888	796 aa		0.73	□□□□□ -2.29
HMRA1	YCR097W	YOL075C	Q08234	1294 aa		0.73	□□□□□ -2.29
HMRA1	YCR097W	YOR012W	Q12351	137 aa		0.73	□□□□□ -2.29
HMRA1	YCR097W	CDC42	P19073	191 aa		0.72	□□□□□ -2.29
HMRA1	YCR097W	YKL187C	P34231	750 aa		0.72	□□□□□ -2.29
HMRA1	YCR097W	NDE1	P40215	560 aa		0.72	□□□□□ -2.29
HMRA1	YCR097W	YNL320W	P42840	284 aa		0.72	□□□□□ -2.29
HMRA1	YCR097W	EPL1	P43572	832 aa		0.72	□□□□□ -2.29
HMRA1	YCR097W	MIG2	P53035	382 aa		0.72	□□□□□ -2.29
HMRA1	YCR097W	LSG1	P53145	640 aa	Known RBP	0.72	□□□□□ -2.29
HMRA1	YCR097W	YGR111W	P53265	400 aa		0.72	□□□□□ -2.29
HMRA1	YCR097W	YAK1	P14680	807 aa		0.71	□□□□□ -2.3
HMRA1	YCR097W	SDS23	P53172	527 aa		0.71	□□□□□ -2.3
HMRA1	YCR097W	TPC1	P53257	314 aa		0.71	□□□□□ -2.3
HMRA1	YCR097W	MEH1	Q02205	184 aa		0.71	□□□□□ -2.3
HMRA1	YCR097W	ERP3	Q12403	225 aa		0.71	□□□□□ -2.3
HMRA1	YCR097W	SPP381	P38282	291 aa	Predicted RBP	0.7	□□□□□ -2.3
HMRA1	YCR097W	LSM4	P40070	187 aa	Known RBP	0.7	□□□□□ -2.3
HMRA1	YCR097W	PIR5	P46999	287 aa		0.7	□□□□□ -2.3
HMRA1	YCR097W	SUE1	Q06524	206 aa		0.7	□□□□□ -2.3
HMRA1	YCR097W	TSR2	Q06672	205 aa	Known RBP	0.7	□□□□□ -2.3
HMRA1	YCR097W	RPL26A	P05743	127 aa	Known RBP	0.69	□□□□□ -2.3
HMRA1	YCR097W	LYS12	P40495	371 aa	Known RBP	0.69	□□□□□ -2.3
HMRA1	YCR097W	LCB2	P40970	561 aa		0.69	□□□□□ -2.3
HMRA1	YCR097W	UFD1	P53044	361 aa		0.69	□□□□□ -2.3
HMRA1	YCR097W	RPL26B	P53221	127 aa	Known RBP	0.69	□□□□□ -2.3
HMRA1	YCR097W	MDM1	Q01846	1127 aa		0.69	□□□□□ -2.3
HMRA1	YCR097W	MHP1	P43638	1398 aa		0.69	□□□□□ -2.3
HMRA1	YCR097W	SRP72	P38688	640 aa	Known RBP	0.68	□□□□□ -2.3
HMRA1	YCR097W	YJL027C	P47063	138 aa	Predicted RBP	0.68	□□□□□ -2.3
HMRA1	YCR097W	YJR146W	P47174	117 aa		0.68	□□□□□ -2.3
HMRA1	YCR097W	LST7	P53237	242 aa		0.68	□□□□□ -2.3
HMRA1	YCR097W	IPK1	Q06667	281 aa		0.68	□□□□□ -2.3
HMRA1	YCR097W	RPN6	Q12377	434 aa		0.68	□□□□□ -2.3
HMRA1	YCR097W	DCP1	Q12517	231 aa	Predicted RBP	0.68	□□□□□ -2.3
HMRA1	YCR097W	EFB1	P32471	206 aa	Known RBP	0.67	□□□□□ -2.3
HMRA1	YCR097W	EDC2	P40023	145 aa	Predicted RBP	0.67	□□□□□ -2.3
HMRA1	YCR097W	ZIM17	P42844	174 aa		0.67	□□□□□ -2.3
HMRA1	YCR097W	PMT4	P46971	762 aa		0.67	□□□□□ -2.3
HMRA1	YCR097W	DCI1	Q08558	271 aa		0.67	□□□□□ -2.3
HMRA1	YCR097W	SCM3	Q12334	223 aa		0.66	□□□□□ -2.3
HMRA1	YCR097W	RRT12	P25381	491 aa		0.65	□□□□□ -2.31
HMRA1	YCR097W	HIS3	P06633	220 aa		0.64	□□□□□ -2.31
HMRA1	YCR097W	RET3	P53600	189 aa		0.64	□□□□□ -2.31
HMRA1	YCR097W	SPH1	Q06160	661 aa		0.64	□□□□□ -2.31
HMRA1	YCR097W	RRG1	Q12167	365 aa	Predicted RBP	0.64	□□□□□ -2.31
HMRA1	YCR097W	PRR2	Q12310	699 aa		0.64	□□□□□ -2.31
HMRA1	YCR097W	MIM1	Q08176	113 aa		0.63	□□□□□ -2.31
HMRA1	YCR097W	LTV1	P34078	463 aa		0.62	□□□□□ -2.31
HMRA1	YCR097W	ATG7	P38862	630 aa		0.62	□□□□□ -2.31
HMRA1	YCR097W	RTC5	Q12108	567 aa	Known RBP	0.62	□□□□□ -2.31
HMRA1	YCR097W	CBP2	P03874	630 aa	Predicted RBP	0.61	□□□□□ -2.31
HMRA1	YCR097W	VPS1	P21576	704 aa	Known RBP	0.61	□□□□□ -2.31
HMRA1	YCR097W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	0.61	□□□□□ -2.31	not detected
HMRA1	YCR097W	YJR141W	P47172	347 aa	Predicted RBP	0.61	□□□□□ -2.31
HMRA1	YCR097W	ISA2	Q12425	185 aa		0.61	□□□□□ -2.31
HMRA1	YCR097W	PFK27	Q12471	397 aa	Predicted RBP	0.61	□□□□□ -2.31
HMRA1	YCR097W	MPE1	P35728	441 aa	Known RBP	0.6	□□□□□ -2.31
HMRA1	YCR097W	SPO77	Q06134	477 aa		0.6	□□□□□ -2.31
HMRA1	YCR097W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	0.59	□□□□□ -2.31	not detected
HMRA1	YCR097W	FUR1	P18562	216 aa	Known RBP	0.59	□□□□□ -2.31
HMRA1	YCR097W	MSK1	P32048	576 aa		0.59	□□□□□ -2.31
HMRA1	YCR097W	YHL044W	P38727	235 aa		0.59	□□□□□ -2.31
HMRA1	YCR097W	LCP5	P40079	357 aa	Predicted RBP	0.59	□□□□□ -2.31
HMRA1	YCR097W	EBS1	Q03466	884 aa	Known RBP	0.59	□□□□□ -2.31
HMRA1	YCR097W	CSM3	Q04659	317 aa		0.59	□□□□□ -2.31
HMRA1	YCR097W	INM2	Q05533	292 aa		0.59	□□□□□ -2.31
HMRA1	YCR097W	YPR078C	Q06813	372 aa		0.59	□□□□□ -2.31
HMRA1	YCR097W	YPL150W	Q12152	901 aa		0.59	□□□□□ -2.31
HMRA1	YCR097W	RPN5	Q12250	445 aa	Known RBP	0.59	□□□□□ -2.31
HMRA1	YCR097W	DBR1	P24309	405 aa	Known RBP	0.58	□□□□□ -2.32
HMRA1	YCR097W	MRPS5	P33759	307 aa		0.58	□□□□□ -2.32
HMRA1	YCR097W	BIO4	P53630	237 aa		0.58	□□□□□ -2.32
HMRA1	YCR097W	OSH6	Q02201	448 aa		0.58	□□□□□ -2.32
HMRA1	YCR097W	SRN2	Q99176	213 aa		0.58	□□□□□ -2.32
HMRA1	YCR097W	NUP57	P48837	541 aa		0.57	□□□□□ -2.32
HMRA1	YCR097W	ALG9	P53868	555 aa	Known RBP	0.57	□□□□□ -2.32
HMRA1	YCR097W	CDC31	P06704	161 aa	Known RBP	0.56	□□□□□ -2.32
HMRA1	YCR097W	ZWF1	P11412	505 aa	Known RBP	0.56	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 142.8 ms