RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W ECM11Q04110 302 aa1.05□□□□□ -2.24
CDC39YCR093W UBX2Q04228 584 aa1.05□□□□□ -2.24
CDC39YCR093W MDM36Q06820 579 aa1.05□□□□□ -2.24
CDC39YCR093W RMD5Q12508 421 aa1.05□□□□□ -2.24
CDC39YCR093W ADH3P07246 375 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W GAL7P08431 366 aa1.05□□□□□ -2.24
CDC39YCR093W OSM1P21375 501 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W ERV1P27882 189 aa1.05□□□□□ -2.24
CDC39YCR093W TRS85P46944 698 aa1.05□□□□□ -2.24
CDC39YCR093W PHB2P50085 310 aa1.05□□□□□ -2.24
CDC39YCR093W WSC2P53832 503 aa1.05□□□□□ -2.24
CDC39YCR093W YNL050CP53952 270 aa1.05□□□□□ -2.24
CDC39YCR093W CWC21Q03375 135 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W ATC1Q04005 294 aa1.05□□□□□ -2.24
CDC39YCR093W ADH6Q04894 360 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W SRL2Q12020 392 aa1.05□□□□□ -2.24
CDC39YCR093W RUD3Q12234 484 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W YBR298C-AQ8TGK4 73 aa1.05□□□□□ -2.24
CDC39YCR093W UNG1P12887 359 aa1.05□□□□□ -2.24
CDC39YCR093W VAM7P32912 316 aa1.05□□□□□ -2.24
CDC39YCR093W BTT1P40314 149 aaPredicted RBP1.05□□□□□ -2.24
CDC39YCR093W SLG1P54867 378 aa1.05□□□□□ -2.24
CDC39YCR093W FSH3Q99369 266 aa1.05□□□□□ -2.24
CDC39YCR093W YEL009C-AA0A023PZF2 135 aa1.05□□□□□ -2.24
CDC39YCR093W YCP4P25349 247 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W PSO2P30620 661 aa1.05□□□□□ -2.24
CDC39YCR093W YKL063CP35725 167 aa1.05□□□□□ -2.24
CDC39YCR093W YBR139WP38109 508 aa1.05□□□□□ -2.24
CDC39YCR093W MMS21P38632 267 aa1.05□□□□□ -2.24
CDC39YCR093W LEU5P38702 357 aa1.05□□□□□ -2.24
CDC39YCR093W VPS52P39904 641 aa1.05□□□□□ -2.24
CDC39YCR093W MEP2P41948 499 aa1.05□□□□□ -2.24
CDC39YCR093W YDR114CQ04597 100 aa1.05□□□□□ -2.24
CDC39YCR093W ARC18Q05933 178 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W DDC1Q08949 612 aa1.05□□□□□ -2.24
CDC39YCR093W THP3Q12049 470 aaKnown RBP1.05□□□□□ -2.24
CDC39YCR093W TOM1Q03280 3268 aa1.05□□□□□ -2.24
CDC39YCR093W CDC50P25656 391 aa1.04□□□□□ -2.24
CDC39YCR093W DPH2P32461 534 aa1.04□□□□□ -2.24
CDC39YCR093W SPO23P33757 523 aa1.04□□□□□ -2.24
CDC39YCR093W SWD2P36104 329 aaPredicted RBP1.04□□□□□ -2.24
CDC39YCR093W MRPL39P36533 70 aa1.04□□□□□ -2.24
CDC39YCR093W SGN1P40561 250 aaKnown RBP RIP-Chip data1.04□□□□□ -2.24not detected
CDC39YCR093W REE1P40893 198 aa1.04□□□□□ -2.24
CDC39YCR093W YET2Q04210 160 aa1.04□□□□□ -2.24
CDC39YCR093W FCY22Q12119 530 aa1.04□□□□□ -2.24
CDC39YCR093W PGA3Q12746 312 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W YOR338WQ99326 363 aa1.04□□□□□ -2.24
CDC39YCR093W PRB1P09232 635 aa1.04□□□□□ -2.24
CDC39YCR093W SRB4P32569 687 aa1.04□□□□□ -2.24
CDC39YCR093W RAD23P32628 398 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W GCG1P32656 232 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W PRS1P32895 427 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W FZO1P38297 855 aa1.04□□□□□ -2.24
CDC39YCR093W MEH1Q02205 184 aa1.04□□□□□ -2.24
CDC39YCR093W MDY2Q12285 212 aa1.04□□□□□ -2.24
CDC39YCR093W REP1P03871 373 aa1.04□□□□□ -2.24
CDC39YCR093W CAR2P07991 424 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W ZUO1P32527 433 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W YDR089WP38966 869 aa1.04□□□□□ -2.24
CDC39YCR093W VPS20Q04272 221 aa1.04□□□□□ -2.24
CDC39YCR093W TY3A-GQ12173 290 aa1.04□□□□□ -2.24
CDC39YCR093W UTP23Q12339 254 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W NAG1Q8TGN9 163 aa1.04□□□□□ -2.24
CDC39YCR093W TY3A-IQ99219 290 aa1.04□□□□□ -2.24
CDC39YCR093W DYN1P36022 4092 aa1.04□□□□□ -2.24
CDC39YCR093W COX4P04037 155 aa1.04□□□□□ -2.24
CDC39YCR093W SCH9P11792 824 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W CAP2P13517 287 aa1.04□□□□□ -2.24
CDC39YCR093W GTO1P48239 356 aa1.04□□□□□ -2.24
CDC39YCR093W YPL077CQ02831 240 aa1.04□□□□□ -2.24
CDC39YCR093W GMC1Q04399 608 aa1.04□□□□□ -2.24
CDC39YCR093W ECM7Q06200 448 aa1.04□□□□□ -2.24
CDC39YCR093W NOP6Q07623 225 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W PLP2Q12017 286 aa1.04□□□□□ -2.24
CDC39YCR093W ORT1Q12375 292 aa1.04□□□□□ -2.24
CDC39YCR093W SPO24Q3E752 67 aa1.04□□□□□ -2.24
CDC39YCR093W YCR024C-BQ3E7Z8 88 aa1.04□□□□□ -2.24
CDC39YCR093W TRP1P00912 224 aa1.04□□□□□ -2.24
CDC39YCR093W IMA3P0CW40 589 aa1.04□□□□□ -2.24
CDC39YCR093W IMA4P0CW41 589 aa1.04□□□□□ -2.24
CDC39YCR093W CMK2P22517 447 aa1.04□□□□□ -2.24
CDC39YCR093W DBR1P24309 405 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W CUE1P38428 203 aa1.04□□□□□ -2.24
CDC39YCR093W YND1P40009 630 aa1.04□□□□□ -2.24
CDC39YCR093W INA22P40576 216 aa1.04□□□□□ -2.24
CDC39YCR093W PRP24P49960 444 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W SEH1P53011 349 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W VEL1P53058 206 aa1.04□□□□□ -2.24
CDC39YCR093W ALG11P53954 548 aaKnown RBP1.04□□□□□ -2.24
CDC39YCR093W KTR5P53966 522 aaPredicted RBP1.04□□□□□ -2.24
CDC39YCR093W AIM33Q04516 312 aa1.04□□□□□ -2.24
CDC39YCR093W IMA2Q08295 589 aa1.04□□□□□ -2.24
CDC39YCR093W NFI1Q12216 726 aa1.04□□□□□ -2.24
CDC39YCR093W RNH203Q12338 110 aa1.04□□□□□ -2.24
CDC39YCR093W YMR316C-AI2HB70 103 aa1.03□□□□□ -2.24
CDC39YCR093W CHS1P08004 1131 aa1.03□□□□□ -2.24
CDC39YCR093W YGR250CP53316 781 aaKnown RBP1.03□□□□□ -2.24
CDC39YCR093W YDR115WQ04598 105 aa1.03□□□□□ -2.24
CDC39YCR093W TAF9Q05027 157 aa1.03□□□□□ -2.24
Retrieved 100 of 5,963 RNA–protein pairs in 49.7 ms