RNA–Protein interactions for RNA: YOR138C

RUP1, Transcript of Protein that regulates ubiquitination of Rsp5p, yeastyeast

Gene RUP1, Length 2,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUP1YOR138C CSI1Q04368 295 aa8.96□□□□□ -0.98
RUP1YOR138C LSP1Q12230 341 aaKnown RBP8.96□□□□□ -0.98
RUP1YOR138C RFC1P38630 861 aaKnown RBP8.95□□□□□ -0.98
RUP1YOR138C NMD2P38798 1089 aaKnown RBP8.95□□□□□ -0.98
RUP1YOR138C RAD50P12753 1312 aa8.95□□□□□ -0.98
RUP1YOR138C SRS2P12954 1174 aa8.94□□□□□ -0.98
RUP1YOR138C DLD1P32891 587 aa8.93□□□□□ -0.98
RUP1YOR138C MAM1P40065 302 aa8.93□□□□□ -0.98
RUP1YOR138C TEA1P47988 759 aa8.93□□□□□ -0.98
RUP1YOR138C PRP43P53131 767 aaKnown RBP8.93□□□□□ -0.98
RUP1YOR138C ADE6P38972 1358 aaKnown RBP8.93□□□□□ -0.98
RUP1YOR138C NTH2P35172 780 aa8.92□□□□□ -0.98
RUP1YOR138C YPP1P46951 817 aa8.92□□□□□ -0.98
RUP1YOR138C HSP104P31539 908 aaKnown RBP8.92□□□□□ -0.98
RUP1YOR138C BMS1Q08965 1183 aaKnown RBP8.92□□□□□ -0.98
RUP1YOR138C YGL081WP53156 320 aa8.91□□□□□ -0.98
RUP1YOR138C KNS1P32350 737 aaPredicted RBP8.9□□□□□ -0.98
RUP1YOR138C BRN1P38170 754 aa8.9□□□□□ -0.98
RUP1YOR138C NUP145P49687 1317 aa8.89□□□□□ -0.99
RUP1YOR138C EDE1P34216 1381 aa8.89□□□□□ -0.99
RUP1YOR138C COQ4O13525 335 aa8.89□□□□□ -0.99
RUP1YOR138C GCR2Q01722 534 aa8.89□□□□□ -0.99
RUP1YOR138C COG8Q04632 607 aa8.89□□□□□ -0.99
RUP1YOR138C NOP8Q08287 484 aaPredicted RBP8.89□□□□□ -0.99
RUP1YOR138C APC1P53886 1748 aa8.89□□□□□ -0.99
RUP1YOR138C TCB2P48231 1178 aa8.88□□□□□ -0.99
RUP1YOR138C YGR122WP53272 402 aa8.88□□□□□ -0.99
RUP1YOR138C NOT3P06102 836 aaKnown RBP8.87□□□□□ -0.99
RUP1YOR138C HXT13P39924 564 aa8.87□□□□□ -0.99
RUP1YOR138C AOS1Q06624 347 aa8.87□□□□□ -0.99
RUP1YOR138C RRP5Q05022 1729 aaKnown RBP8.87□□□□□ -0.99
RUP1YOR138C RPS19AP07280 144 aaKnown RBP8.87□□□□□ -0.99
RUP1YOR138C RPS19BP07281 144 aaPredicted RBP8.87□□□□□ -0.99
RUP1YOR138C RAD24P32641 659 aa8.87□□□□□ -0.99
RUP1YOR138C BDP1P46678 594 aa8.86□□□□□ -0.99
RUP1YOR138C YRF1-2P40105 1681 aa8.85□□□□□ -0.99
RUP1YOR138C LEO1P38439 464 aa8.85□□□□□ -0.99
RUP1YOR138C HXT17P53631 564 aa8.85□□□□□ -0.99
RUP1YOR138C TY4B-HP0C2J7 1802 aa8.84□□□□□ -0.99
RUP1YOR138C TY4B-JP47024 1803 aa8.84□□□□□ -0.99
RUP1YOR138C VAS1P07806 1104 aaKnown RBP8.84□□□□□ -0.99
RUP1YOR138C NPA3P47122 385 aa8.84□□□□□ -0.99
RUP1YOR138C VPS20Q04272 221 aa8.84□□□□□ -0.99
RUP1YOR138C RSC1P53236 928 aa8.83□□□□□ -1
RUP1YOR138C CTR9P89105 1077 aa8.83□□□□□ -1
RUP1YOR138C SWC3P31376 625 aa8.83□□□□□ -1
RUP1YOR138C NSE3Q05541 303 aa8.83□□□□□ -1
RUP1YOR138C YIL177CP40434 1758 aa8.82□□□□□ -1
RUP1YOR138C YJL225CP40889 1758 aa8.82□□□□□ -1
RUP1YOR138C HAP5Q02516 242 aa8.82□□□□□ -1
RUP1YOR138C RNR2P09938 399 aaKnown RBP8.81□□□□□ -1
RUP1YOR138C ROM2P51862 1356 aaKnown RBP8.81□□□□□ -1
RUP1YOR138C LCD1Q04377 747 aa8.81□□□□□ -1
RUP1YOR138C MRP7P12687 371 aa8.8□□□□□ -1
RUP1YOR138C RAD4P14736 754 aa8.8□□□□□ -1
RUP1YOR138C KRI1P42846 591 aaKnown RBP8.8□□□□□ -1
RUP1YOR138C MDG1P53885 366 aa8.8□□□□□ -1
RUP1YOR138C RMD1Q03441 430 aa8.8□□□□□ -1
RUP1YOR138C CDC16P09798 840 aa8.79□□□□□ -1
RUP1YOR138C UGA3P26370 528 aa8.79□□□□□ -1
RUP1YOR138C YOL057WQ08225 711 aa8.79□□□□□ -1
RUP1YOR138C BIK1P11709 440 aa8.78□□□□□ -1
RUP1YOR138C KCC4P25389 1037 aa8.78□□□□□ -1
RUP1YOR138C GCD7P32502 381 aaPredicted RBP8.78□□□□□ -1
RUP1YOR138C BDH2P39713 417 aa8.78□□□□□ -1
RUP1YOR138C BOI2P39969 1040 aa8.78□□□□□ -1
RUP1YOR138C RKM3P38222 552 aa8.77□□□□□ -1.01
RUP1YOR138C RVS167P39743 482 aaKnown RBP8.77□□□□□ -1.01
RUP1YOR138C HST1P53685 503 aa8.77□□□□□ -1.01
RUP1YOR138C ZDS2P54786 942 aa8.77□□□□□ -1.01
RUP1YOR138C CTF4Q01454 927 aa8.77□□□□□ -1.01
RUP1YOR138C FKS3Q04952 1785 aa8.76□□□□□ -1.01
RUP1YOR138C CIR1P42940 261 aa8.76□□□□□ -1.01
RUP1YOR138C HRQ1Q05549 1077 aa8.76□□□□□ -1.01
RUP1YOR138C TRL1P09880 827 aaKnown RBP8.76□□□□□ -1.01
RUP1YOR138C FPR4Q06205 392 aaPredicted RBP8.76□□□□□ -1.01
RUP1YOR138C URB1P34241 1764 aaKnown RBP8.76□□□□□ -1.01
RUP1YOR138C PRP5P21372 849 aaPredicted RBP8.75□□□□□ -1.01
RUP1YOR138C RPN12P32496 274 aa8.75□□□□□ -1.01
RUP1YOR138C NUP133P36161 1157 aa8.75□□□□□ -1.01
RUP1YOR138C PRP45P28004 379 aaPredicted RBP8.75□□□□□ -1.01
RUP1YOR138C RSM25P40496 264 aa8.75□□□□□ -1.01
RUP1YOR138C ALE1Q08548 619 aa8.75□□□□□ -1.01
RUP1YOR138C MIC60P36112 540 aa8.74□□□□□ -1.01
RUP1YOR138C MSB3P48566 633 aaPredicted RBP8.74□□□□□ -1.01
RUP1YOR138C PIL1P53252 339 aaKnown RBP8.74□□□□□ -1.01
RUP1YOR138C SLM3Q12093 417 aa8.74□□□□□ -1.01
RUP1YOR138C APC11Q12157 165 aa8.74□□□□□ -1.01
RUP1YOR138C DID4P36108 232 aa8.73□□□□□ -1.01
RUP1YOR138C RCR1P38212 213 aa8.73□□□□□ -1.01
RUP1YOR138C NCB2Q92317 146 aa8.73□□□□□ -1.01
RUP1YOR138C KEX1P09620 729 aa8.73□□□□□ -1.01
RUP1YOR138C MCM2P29469 868 aa8.73□□□□□ -1.01
RUP1YOR138C XKS1P42826 600 aa8.73□□□□□ -1.01
RUP1YOR138C THI12P42883 340 aa8.73□□□□□ -1.01
RUP1YOR138C THI5P43534 340 aa8.73□□□□□ -1.01
RUP1YOR138C THI11P47183 340 aa8.73□□□□□ -1.01
RUP1YOR138C YMR196WQ04336 1088 aa8.73□□□□□ -1.01
RUP1YOR138C YDR306CQ06640 478 aa8.73□□□□□ -1.01
RUP1YOR138C THI13Q07748 340 aa8.73□□□□□ -1.01
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms