RNA–Protein interactions for RNA: YOL112W

MSB4, Transcript of GTPase-activating protein of the Ras superfamily, yeast

Gene MSB4, Length 1,479 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSB4	YOL112W	CTF4	Q01454	927 aa		12.33	□□□□□ -0.44
MSB4	YOL112W	NTH2	P35172	780 aa		12.31	□□□□□ -0.44
MSB4	YOL112W	RTR1	P40084	226 aa	Predicted RBP	12.31	□□□□□ -0.44
MSB4	YOL112W	AOS1	Q06624	347 aa		12.3	□□□□□ -0.44
MSB4	YOL112W	SSA2	P10592	639 aa	Known RBP	12.29	□□□□□ -0.44
MSB4	YOL112W	GTT3	P39996	337 aa		12.29	□□□□□ -0.44
MSB4	YOL112W	ALD2	P47771	506 aa		12.29	□□□□□ -0.44
MSB4	YOL112W	YBP2	P53169	641 aa		12.29	□□□□□ -0.44
MSB4	YOL112W	MSB4	Q12317	492 aa		12.28	□□□□□ -0.44
MSB4	YOL112W	PRD1	P25375	712 aa		12.27	□□□□□ -0.44
MSB4	YOL112W	IOC4	Q04213	475 aa		12.27	□□□□□ -0.44
MSB4	YOL112W	TUM1	Q08686	304 aa	Known RBP	12.27	□□□□□ -0.44
MSB4	YOL112W	GRX1	P25373	110 aa	Known RBP	12.27	□□□□□ -0.45
MSB4	YOL112W	UGA2	P38067	497 aa		12.27	□□□□□ -0.45
MSB4	YOL112W	MPP10	P47083	593 aa	Known RBP	12.25	□□□□□ -0.45
MSB4	YOL112W	UTP10	P42945	1769 aa	Known RBP	12.24	□□□□□ -0.45
MSB4	YOL112W	KCC4	P25389	1037 aa		12.24	□□□□□ -0.45
MSB4	YOL112W	GRE2	Q12068	342 aa	Known RBP	12.24	□□□□□ -0.45
MSB4	YOL112W	THI22	Q06490	572 aa		12.23	□□□□□ -0.45
MSB4	YOL112W	ALE1	Q08548	619 aa		12.23	□□□□□ -0.45
MSB4	YOL112W	RAD4	P14736	754 aa		12.22	□□□□□ -0.45
MSB4	YOL112W	BDF1	P35817	686 aa		12.22	□□□□□ -0.45
MSB4	YOL112W	YNL050C	P53952	270 aa		12.22	□□□□□ -0.45
MSB4	YOL112W	YDL144C	Q07589	356 aa		12.21	□□□□□ -0.45
MSB4	YOL112W	RPG1	P38249	964 aa	Known RBP	12.21	□□□□□ -0.46
MSB4	YOL112W	RMT2	Q03305	412 aa		12.2	□□□□□ -0.46
MSB4	YOL112W	BUG1	Q12191	341 aa		12.2	□□□□□ -0.46
MSB4	YOL112W	RTT109	Q07794	436 aa		12.19	□□□□□ -0.46
MSB4	YOL112W	UGA3	P26370	528 aa		12.17	□□□□□ -0.46
MSB4	YOL112W	HEF3	P53978	1044 aa	Known RBP	12.15	□□□□□ -0.46
MSB4	YOL112W	ALD3	P54114	506 aa		12.15	□□□□□ -0.46
MSB4	YOL112W	NOP53	Q12080	455 aa	Known RBP	12.15	□□□□□ -0.46
MSB4	YOL112W	ZDS1	P50111	915 aa	Known RBP	12.14	□□□□□ -0.47
MSB4	YOL112W	TPD3	P31383	635 aa		12.14	□□□□□ -0.47
MSB4	YOL112W	TOS1	P38288	455 aa		12.14	□□□□□ -0.47
MSB4	YOL112W	NSE3	Q05541	303 aa		12.14	□□□□□ -0.47
MSB4	YOL112W	RRT14	P40470	206 aa		12.13	□□□□□ -0.47
MSB4	YOL112W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	12.13	□□□□□ -0.47	not detected
MSB4	YOL112W	SAP155	P43612	1002 aa		12.13	□□□□□ -0.47
MSB4	YOL112W	TEA1	P47988	759 aa		12.13	□□□□□ -0.47
MSB4	YOL112W	UTP22	P53254	1237 aa	Predicted RBP	12.13	□□□□□ -0.47
MSB4	YOL112W	NYV1	Q12255	253 aa		12.13	□□□□□ -0.47
MSB4	YOL112W	LYS2	P07702	1392 aa		12.12	□□□□□ -0.47
MSB4	YOL112W	COQ4	O13525	335 aa		12.12	□□□□□ -0.47
MSB4	YOL112W	YBR287W	P38355	427 aa		12.12	□□□□□ -0.47
MSB4	YOL112W	BMS1	Q08965	1183 aa	Known RBP	12.12	□□□□□ -0.47
MSB4	YOL112W	MAM1	P40065	302 aa		12.11	□□□□□ -0.47
MSB4	YOL112W	RIX7	Q07844	837 aa	Known RBP	12.1	□□□□□ -0.47
MSB4	YOL112W	SUI2	P20459	304 aa	Known RBP	12.09	□□□□□ -0.47
MSB4	YOL112W	PHM7	Q12252	991 aa		12.09	□□□□□ -0.47
MSB4	YOL112W	GYP7	P48365	746 aa		12.08	□□□□□ -0.47
MSB4	YOL112W	ZDS2	P54786	942 aa		12.08	□□□□□ -0.47
MSB4	YOL112W	MDG1	P53885	366 aa		12.08	□□□□□ -0.48
MSB4	YOL112W	HPC2	Q01448	625 aa		12.08	□□□□□ -0.48
MSB4	YOL112W	RPP0	P05317	312 aa	Known RBP	12.07	□□□□□ -0.48
MSB4	YOL112W	SER1	P33330	395 aa	Known RBP	12.07	□□□□□ -0.48
MSB4	YOL112W	SSP2	Q08646	371 aa		12.07	□□□□□ -0.48
MSB4	YOL112W	ARG8	P18544	423 aa		12.06	□□□□□ -0.48
MSB4	YOL112W	YGL082W	P53155	381 aa		12.06	□□□□□ -0.48
MSB4	YOL112W	CTI6	Q08923	506 aa		12.06	□□□□□ -0.48
MSB4	YOL112W	APL2	P36000	726 aa	Predicted RBP	12.05	□□□□□ -0.48
MSB4	YOL112W	VPS27	P40343	622 aa	Known RBP	12.05	□□□□□ -0.48
MSB4	YOL112W	YFR016C	P43597	1233 aa	Known RBP	12.05	□□□□□ -0.48
MSB4	YOL112W	DCD1	P06773	312 aa		12.04	□□□□□ -0.48
MSB4	YOL112W	EAF6	P47128	113 aa		12.04	□□□□□ -0.48
MSB4	YOL112W	PMD1	P32634	1753 aa		12.03	□□□□□ -0.48
MSB4	YOL112W	SRT1	Q03175	343 aa		12.03	□□□□□ -0.48
MSB4	YOL112W	YPR204W	Q08995	1032 aa		12.03	□□□□□ -0.48
MSB4	YOL112W	VPS64	Q03944	604 aa		12.02	□□□□□ -0.48
MSB4	YOL112W	YOL057W	Q08225	711 aa		12.02	□□□□□ -0.48
MSB4	YOL112W	LPD1	P09624	499 aa	Known RBP	12	□□□□□ -0.49
MSB4	YOL112W	CDC45	Q08032	650 aa		12	□□□□□ -0.49
MSB4	YOL112W	MSN5	P52918	1224 aa		11.99	□□□□□ -0.49
MSB4	YOL112W	RVB2	Q12464	471 aa	Known RBP	11.99	□□□□□ -0.49
MSB4	YOL112W	PRS1	P32895	427 aa	Known RBP	11.97	□□□□□ -0.49
MSB4	YOL112W	YDR306C	Q06640	478 aa		11.96	□□□□□ -0.49
MSB4	YOL112W	SWI1	P09547	1314 aa		11.96	□□□□□ -0.49
MSB4	YOL112W	RAT1	Q02792	1006 aa	Known RBP	11.95	□□□□□ -0.5
MSB4	YOL112W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.95	□□□□□ -0.5	not detected
MSB4	YOL112W	ERT1	P38140	529 aa		11.95	□□□□□ -0.5
MSB4	YOL112W	YGR122W	P53272	402 aa		11.95	□□□□□ -0.5
MSB4	YOL112W	SSA1	P10591	642 aa	Known RBP	11.94	□□□□□ -0.5
MSB4	YOL112W	DNM1	P54861	757 aa		11.94	□□□□□ -0.5
MSB4	YOL112W	MRP7	P12687	371 aa		11.93	□□□□□ -0.5
MSB4	YOL112W	CWH41	P53008	833 aa		11.93	□□□□□ -0.5
MSB4	YOL112W	KIN4	Q01919	800 aa		11.93	□□□□□ -0.5
MSB4	YOL112W	NUP133	P36161	1157 aa		11.92	□□□□□ -0.5
MSB4	YOL112W	CST6	P40535	587 aa		11.92	□□□□□ -0.5
MSB4	YOL112W	FCP1	Q03254	732 aa		11.92	□□□□□ -0.5
MSB4	YOL112W	YLR271W	Q06152	274 aa		11.92	□□□□□ -0.5
MSB4	YOL112W	CTT1	P06115	562 aa		11.91	□□□□□ -0.5
MSB4	YOL112W	SMY1	P32364	656 aa	Known RBP	11.91	□□□□□ -0.5
MSB4	YOL112W	YKL222C	P35995	705 aa		11.91	□□□□□ -0.5
MSB4	YOL112W	BDF2	Q07442	638 aa		11.91	□□□□□ -0.5
MSB4	YOL112W	PFF1	P38244	976 aa		11.9	□□□□□ -0.5
MSB4	YOL112W	CAF20	P12962	161 aa	Known RBP	11.89	□□□□□ -0.51
MSB4	YOL112W	YJR008W	P47085	338 aa		11.89	□□□□□ -0.51
MSB4	YOL112W	PKH1	Q03407	766 aa		11.89	□□□□□ -0.51
MSB4	YOL112W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	11.89	□□□□□ -0.51	not detected
MSB4	YOL112W	SSK22	P25390	1331 aa	Predicted RBP	11.89	□□□□□ -0.51

Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms