RNA–Protein interactions for RNA: YKR043C

SHB17, Transcript of Sedoheptulose bisphosphatase involved in riboneogenesis, yeast

Gene SHB17, Length 816 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHB17	YKR043C	OSM1	P21375	501 aa	Known RBP	13.31	□□□□□ -0.28
SHB17	YKR043C	NUP145	P49687	1317 aa		13.3	□□□□□ -0.28
SHB17	YKR043C	CTF4	Q01454	927 aa		13.29	□□□□□ -0.28
SHB17	YKR043C	RRP46	P53256	223 aa	Predicted RBP	13.28	□□□□□ -0.28
SHB17	YKR043C	MSB4	Q12317	492 aa		13.27	□□□□□ -0.29
SHB17	YKR043C	SPT7	P35177	1332 aa		13.26	□□□□□ -0.29
SHB17	YKR043C	GRX1	P25373	110 aa	Known RBP	13.25	□□□□□ -0.29
SHB17	YKR043C	BDF1	P35817	686 aa		13.24	□□□□□ -0.29
SHB17	YKR043C	YBP2	P53169	641 aa		13.24	□□□□□ -0.29
SHB17	YKR043C	AOS1	Q06624	347 aa		13.23	□□□□□ -0.29
SHB17	YKR043C	RAD4	P14736	754 aa		13.22	□□□□□ -0.29
SHB17	YKR043C	NTH2	P35172	780 aa		13.22	□□□□□ -0.29
SHB17	YKR043C	GRE2	Q12068	342 aa	Known RBP	13.21	□□□□□ -0.29
SHB17	YKR043C	RPG1	P38249	964 aa	Known RBP	13.19	□□□□□ -0.3
SHB17	YKR043C	IOC4	Q04213	475 aa		13.19	□□□□□ -0.3
SHB17	YKR043C	BUG1	Q12191	341 aa		13.19	□□□□□ -0.3
SHB17	YKR043C	TUM1	Q08686	304 aa	Known RBP	13.18	□□□□□ -0.3
SHB17	YKR043C	RTR1	P40084	226 aa	Predicted RBP	13.17	□□□□□ -0.3
SHB17	YKR043C	ALD3	P54114	506 aa		13.17	□□□□□ -0.3
SHB17	YKR043C	KCC4	P25389	1037 aa		13.16	□□□□□ -0.3
SHB17	YKR043C	PRD1	P25375	712 aa		13.14	□□□□□ -0.31
SHB17	YKR043C	RMT2	Q03305	412 aa		13.14	□□□□□ -0.31
SHB17	YKR043C	UTP22	P53254	1237 aa	Predicted RBP	13.13	□□□□□ -0.31
SHB17	YKR043C	ALE1	Q08548	619 aa		13.13	□□□□□ -0.31
SHB17	YKR043C	YNL050C	P53952	270 aa		13.12	□□□□□ -0.31
SHB17	YKR043C	TOS1	P38288	455 aa		13.11	□□□□□ -0.31
SHB17	YKR043C	UGA3	P26370	528 aa		13.09	□□□□□ -0.31
SHB17	YKR043C	MPP10	P47083	593 aa	Known RBP	13.08	□□□□□ -0.32
SHB17	YKR043C	THI22	Q06490	572 aa		13.08	□□□□□ -0.32
SHB17	YKR043C	NOP53	Q12080	455 aa	Known RBP	13.08	□□□□□ -0.32
SHB17	YKR043C	NYV1	Q12255	253 aa		13.07	□□□□□ -0.32
SHB17	YKR043C	NSE3	Q05541	303 aa		13.06	□□□□□ -0.32
SHB17	YKR043C	TEA1	P47988	759 aa		13.05	□□□□□ -0.32
SHB17	YKR043C	MDG1	P53885	366 aa		13.05	□□□□□ -0.32
SHB17	YKR043C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	13.04	□□□□□ -0.32	not detected
SHB17	YKR043C	HPC2	Q01448	625 aa		13.04	□□□□□ -0.32
SHB17	YKR043C	YDL144C	Q07589	356 aa		13.04	□□□□□ -0.32
SHB17	YKR043C	LYS2	P07702	1392 aa		13.04	□□□□□ -0.32
SHB17	YKR043C	UTP10	P42945	1769 aa	Known RBP	13.03	□□□□□ -0.32
SHB17	YKR043C	ZDS1	P50111	915 aa	Known RBP	13.03	□□□□□ -0.32
SHB17	YKR043C	RTT109	Q07794	436 aa		13.03	□□□□□ -0.32
SHB17	YKR043C	RIX7	Q07844	837 aa	Known RBP	13.03	□□□□□ -0.32
SHB17	YKR043C	PHM7	Q12252	991 aa		13.03	□□□□□ -0.32
SHB17	YKR043C	MAM1	P40065	302 aa		13.02	□□□□□ -0.33
SHB17	YKR043C	SAP155	P43612	1002 aa		13	□□□□□ -0.33
SHB17	YKR043C	EAF6	P47128	113 aa		13	□□□□□ -0.33
SHB17	YKR043C	SSP2	Q08646	371 aa		13	□□□□□ -0.33
SHB17	YKR043C	COQ4	O13525	335 aa		12.99	□□□□□ -0.33
SHB17	YKR043C	SSA1	P10591	642 aa	Known RBP	12.99	□□□□□ -0.33
SHB17	YKR043C	HEF3	P53978	1044 aa	Known RBP	12.99	□□□□□ -0.33
SHB17	YKR043C	BMS1	Q08965	1183 aa	Known RBP	12.99	□□□□□ -0.33
SHB17	YKR043C	SER1	P33330	395 aa	Known RBP	12.98	□□□□□ -0.33
SHB17	YKR043C	RRT14	P40470	206 aa		12.98	□□□□□ -0.33
SHB17	YKR043C	YFR016C	P43597	1233 aa	Known RBP	12.98	□□□□□ -0.33
SHB17	YKR043C	MSN5	P52918	1224 aa		12.97	□□□□□ -0.33
SHB17	YKR043C	CTI6	Q08923	506 aa		12.97	□□□□□ -0.33
SHB17	YKR043C	TPD3	P31383	635 aa		12.96	□□□□□ -0.33
SHB17	YKR043C	YBR287W	P38355	427 aa		12.96	□□□□□ -0.33
SHB17	YKR043C	GYP7	P48365	746 aa		12.96	□□□□□ -0.33
SHB17	YKR043C	YGL082W	P53155	381 aa		12.96	□□□□□ -0.33
SHB17	YKR043C	ARG8	P18544	423 aa		12.95	□□□□□ -0.34
SHB17	YKR043C	LPD1	P09624	499 aa	Known RBP	12.94	□□□□□ -0.34
SHB17	YKR043C	ZDS2	P54786	942 aa		12.93	□□□□□ -0.34
SHB17	YKR043C	YPR204W	Q08995	1032 aa		12.93	□□□□□ -0.34
SHB17	YKR043C	RPP0	P05317	312 aa	Known RBP	12.92	□□□□□ -0.34
SHB17	YKR043C	DCD1	P06773	312 aa		12.92	□□□□□ -0.34
SHB17	YKR043C	APL2	P36000	726 aa	Predicted RBP	12.92	□□□□□ -0.34
SHB17	YKR043C	ERT1	P38140	529 aa		12.92	□□□□□ -0.34
SHB17	YKR043C	RAT1	Q02792	1006 aa	Known RBP	12.91	□□□□□ -0.34
SHB17	YKR043C	YOL057W	Q08225	711 aa		12.91	□□□□□ -0.34
SHB17	YKR043C	CTT1	P06115	562 aa		12.9	□□□□□ -0.34
SHB17	YKR043C	VPS64	Q03944	604 aa		12.9	□□□□□ -0.34
SHB17	YKR043C	SUI2	P20459	304 aa	Known RBP	12.89	□□□□□ -0.35
SHB17	YKR043C	YKL222C	P35995	705 aa		12.89	□□□□□ -0.35
SHB17	YKR043C	CWH41	P53008	833 aa		12.88	□□□□□ -0.35
SHB17	YKR043C	KIN4	Q01919	800 aa		12.88	□□□□□ -0.35
SHB17	YKR043C	SRT1	Q03175	343 aa		12.88	□□□□□ -0.35
SHB17	YKR043C	PFF1	P38244	976 aa		12.87	□□□□□ -0.35
SHB17	YKR043C	YER156C	P40093	338 aa	Known RBP	12.87	□□□□□ -0.35
SHB17	YKR043C	VPS27	P40343	622 aa	Known RBP	12.87	□□□□□ -0.35
SHB17	YKR043C	BDF2	Q07442	638 aa		12.85	□□□□□ -0.35
SHB17	YKR043C	SMY1	P32364	656 aa	Known RBP	12.84	□□□□□ -0.35
SHB17	YKR043C	DNM1	P54861	757 aa		12.84	□□□□□ -0.35
SHB17	YKR043C	YDR306C	Q06640	478 aa		12.84	□□□□□ -0.35
SHB17	YKR043C	DIB1	Q06819	143 aa	Predicted RBP	12.84	□□□□□ -0.35
SHB17	YKR043C	SWI1	P09547	1314 aa		12.84	□□□□□ -0.35
SHB17	YKR043C	YLR271W	Q06152	274 aa		12.82	□□□□□ -0.36
SHB17	YKR043C	CDC45	Q08032	650 aa		12.82	□□□□□ -0.36
SHB17	YKR043C	SSK22	P25390	1331 aa	Predicted RBP	12.82	□□□□□ -0.36
SHB17	YKR043C	HAT1	Q12341	374 aa		12.81	□□□□□ -0.36
SHB17	YKR043C	PMD1	P32634	1753 aa		12.8	□□□□□ -0.36
SHB17	YKR043C	CST6	P40535	587 aa		12.8	□□□□□ -0.36
SHB17	YKR043C	ERO1	Q03103	563 aa		12.8	□□□□□ -0.36
SHB17	YKR043C	IRC3	Q06683	689 aa		12.8	□□□□□ -0.36
SHB17	YKR043C	MRP7	P12687	371 aa		12.79	□□□□□ -0.36
SHB17	YKR043C	YJR008W	P47085	338 aa		12.79	□□□□□ -0.36
SHB17	YKR043C	NUP133	P36161	1157 aa		12.78	□□□□□ -0.36
SHB17	YKR043C	PKH1	Q03407	766 aa		12.78	□□□□□ -0.36
SHB17	YKR043C	CAF20	P12962	161 aa	Known RBP	12.77	□□□□□ -0.37
SHB17	YKR043C	UBP16	Q02863	499 aa		12.77	□□□□□ -0.37

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms