RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W UBP9P39967 754 aa8.48□□□□□ -1.05
PRP40YKL012W YPR084WQ06821 456 aa8.48□□□□□ -1.05
PRP40YKL012W ALR1Q08269 859 aa8.48□□□□□ -1.05
PRP40YKL012W ORC1P54784 914 aaPredicted RBP8.48□□□□□ -1.05
PRP40YKL012W NCR1Q12200 1170 aa8.48□□□□□ -1.05
PRP40YKL012W YEL077CQ3E7X8 1277 aa8.48□□□□□ -1.05
PRP40YKL012W CWC15Q03772 175 aaKnown RBP8.47□□□□□ -1.05
PRP40YKL012W PHO87P25360 923 aa8.46□□□□□ -1.05
PRP40YKL012W APL6P46682 809 aa8.46□□□□□ -1.05
PRP40YKL012W ARH1P48360 493 aa8.46□□□□□ -1.05
PRP40YKL012W UTP13Q05946 817 aaKnown RBP8.46□□□□□ -1.05
PRP40YKL012W SEC20P28791 383 aa8.45□□□□□ -1.06
PRP40YKL012W ERP5P38819 212 aa8.45□□□□□ -1.06
PRP40YKL012W IPL1P38991 367 aa8.45□□□□□ -1.06
PRP40YKL012W PUF6Q04373 656 aaKnown RBP8.45□□□□□ -1.06
PRP40YKL012W BUD20Q08004 166 aaPredicted RBP8.45□□□□□ -1.06
PRP40YKL012W PAM1P37304 830 aaKnown RBP8.45□□□□□ -1.06
PRP40YKL012W TPS3P38426 1054 aaKnown RBP8.45□□□□□ -1.06
PRP40YKL012W HAP4P14064 554 aa8.44□□□□□ -1.06
PRP40YKL012W KAR5Q04746 504 aa8.44□□□□□ -1.06
PRP40YKL012W PDC1P06169 563 aaKnown RBP8.43□□□□□ -1.06
PRP40YKL012W ASF1P32447 279 aa8.43□□□□□ -1.06
PRP40YKL012W SOH1P38633 127 aa8.43□□□□□ -1.06
PRP40YKL012W PAC1P39946 494 aaKnown RBP8.43□□□□□ -1.06
PRP40YKL012W ACS2P52910 683 aaKnown RBP8.43□□□□□ -1.06
PRP40YKL012W TRL1P09880 827 aaKnown RBP8.42□□□□□ -1.06
PRP40YKL012W BNI4P53858 892 aa8.42□□□□□ -1.06
PRP40YKL012W MSC6Q08818 692 aaKnown RBP8.42□□□□□ -1.06
PRP40YKL012W ROM1P53046 1155 aa8.41□□□□□ -1.06
PRP40YKL012W KXD1P53158 218 aa8.4□□□□□ -1.06
PRP40YKL012W MET10P39692 1035 aa8.4□□□□□ -1.07
PRP40YKL012W TSC13Q99190 310 aa8.4□□□□□ -1.07
PRP40YKL012W YDR344CQ05510 147 aa8.39□□□□□ -1.07
PRP40YKL012W PNP1Q05788 311 aa8.38□□□□□ -1.07
PRP40YKL012W GAS4Q08271 471 aa8.38□□□□□ -1.07
PRP40YKL012W PRT1P06103 763 aaKnown RBP8.38□□□□□ -1.07
PRP40YKL012W SAP30P38429 201 aa8.38□□□□□ -1.07
PRP40YKL012W HXT10P43581 546 aa8.38□□□□□ -1.07
PRP40YKL012W VAC17P25591 423 aa8.37□□□□□ -1.07
PRP40YKL012W YHL050CP38721 697 aa8.37□□□□□ -1.07
PRP40YKL012W YHR219WP38900 624 aa8.37□□□□□ -1.07
PRP40YKL012W RRN7P40992 514 aa8.37□□□□□ -1.07
PRP40YKL012W MDJ2P42834 146 aa8.37□□□□□ -1.07
PRP40YKL012W PAT1P25644 796 aaKnown RBP8.36□□□□□ -1.07
PRP40YKL012W ITT1Q04638 464 aa8.36□□□□□ -1.07
PRP40YKL012W SRS2P12954 1174 aa8.35□□□□□ -1.07
PRP40YKL012W TPD3P31383 635 aa8.35□□□□□ -1.07
PRP40YKL012W GRS1P38088 690 aaKnown RBP8.35□□□□□ -1.07
PRP40YKL012W ATG1P53104 897 aa8.35□□□□□ -1.07
PRP40YKL012W PDI1P17967 522 aaKnown RBP8.35□□□□□ -1.07
PRP40YKL012W PUN1Q06991 263 aa8.35□□□□□ -1.07
PRP40YKL012W YPR015CQ12531 247 aa8.35□□□□□ -1.07
PRP40YKL012W SPT23P35210 1082 aa8.34□□□□□ -1.07
PRP40YKL012W BOL3P39724 118 aa8.34□□□□□ -1.07
PRP40YKL012W PPX1P38698 397 aa8.33□□□□□ -1.08
PRP40YKL012W PTC2P39966 464 aaKnown RBP8.33□□□□□ -1.08
PRP40YKL012W ELP4Q02884 456 aaKnown RBP8.33□□□□□ -1.08
PRP40YKL012W RRP15Q06511 250 aaPredicted RBP8.33□□□□□ -1.08
PRP40YKL012W IXR1P33417 597 aa8.33□□□□□ -1.08
PRP40YKL012W RRD1P40454 393 aaKnown RBP8.33□□□□□ -1.08
PRP40YKL012W ALD2P47771 506 aa8.33□□□□□ -1.08
PRP40YKL012W CBC2Q08920 208 aaKnown RBP RIP-Chip data8.33□□□□□ -1.08not detected
PRP40YKL012W FUR4P05316 633 aaKnown RBP8.32□□□□□ -1.08
PRP40YKL012W VAN1P23642 535 aa8.32□□□□□ -1.08
PRP40YKL012W HAL5P38970 855 aaKnown RBP8.32□□□□□ -1.08
PRP40YKL012W YFL034WP43564 1073 aa8.31□□□□□ -1.08
PRP40YKL012W ISR1Q06098 443 aaKnown RBP8.3□□□□□ -1.08
PRP40YKL012W SPT16P32558 1035 aaKnown RBP8.3□□□□□ -1.08
PRP40YKL012W FKH1P40466 484 aa8.3□□□□□ -1.08
PRP40YKL012W POL32P47110 350 aa8.3□□□□□ -1.08
PRP40YKL012W WHI5Q12416 295 aa8.3□□□□□ -1.08
PRP40YKL012W TRS33Q99394 268 aa8.3□□□□□ -1.08
PRP40YKL012W MOD5P07884 428 aa8.29□□□□□ -1.08
PRP40YKL012W MIP1P15801 1254 aa8.29□□□□□ -1.08
PRP40YKL012W AIM9P40053 627 aaKnown RBP8.29□□□□□ -1.08
PRP40YKL012W ACF4P47129 309 aa8.29□□□□□ -1.08
PRP40YKL012W YML082WQ04533 649 aaKnown RBP8.29□□□□□ -1.08
PRP40YKL012W ATE1P16639 503 aa8.28□□□□□ -1.08
PRP40YKL012W QDR1P40475 563 aa8.27□□□□□ -1.08
PRP40YKL012W HDA3Q06623 655 aa8.27□□□□□ -1.08
PRP40YKL012W GLO3P38682 493 aaKnown RBP8.27□□□□□ -1.09
PRP40YKL012W ALD4P46367 519 aaKnown RBP8.27□□□□□ -1.09
PRP40YKL012W ATG20Q07528 640 aa8.27□□□□□ -1.09
PRP40YKL012W THI12P42883 340 aa8.25□□□□□ -1.09
PRP40YKL012W THI5P43534 340 aa8.25□□□□□ -1.09
PRP40YKL012W THI11P47183 340 aa8.25□□□□□ -1.09
PRP40YKL012W NUT2Q06213 157 aa8.25□□□□□ -1.09
PRP40YKL012W THI13Q07748 340 aa8.25□□□□□ -1.09
PRP40YKL012W UBP1P25037 809 aa8.25□□□□□ -1.09
PRP40YKL012W NTH2P35172 780 aa8.25□□□□□ -1.09
PRP40YKL012W SUV3P32580 737 aa8.24□□□□□ -1.09
PRP40YKL012W FRT1Q99332 602 aa8.24□□□□□ -1.09
PRP40YKL012W LSO1Q3E827 93 aa8.23□□□□□ -1.09
PRP40YKL012W SVF1Q05515 481 aa8.22□□□□□ -1.09
PRP40YKL012W CWH41P53008 833 aa8.21□□□□□ -1.1
PRP40YKL012W CYT1P07143 309 aa8.2□□□□□ -1.1
PRP40YKL012W NGR1P32831 672 aaKnown RBP8.2□□□□□ -1.1
PRP40YKL012W SAS4Q04003 481 aa8.2□□□□□ -1.1
PRP40YKL012W STB3Q12427 513 aa8.2□□□□□ -1.1
PRP40YKL012W RPS6AP0CX37 236 aaKnown RBP8.19□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 50.3 ms