RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 GYP7P48365 746 aa10.66□□□□□ -0.7
LSR1LSR1 ILV3P39522 585 aaKnown RBP10.65□□□□□ -0.7
LSR1LSR1 YPR148CQ06523 435 aa10.65□□□□□ -0.7
LSR1LSR1 NTH2P35172 780 aa10.64□□□□□ -0.71
LSR1LSR1 SNF7P39929 240 aaKnown RBP10.64□□□□□ -0.71
LSR1LSR1 RRT14P40470 206 aa10.63□□□□□ -0.71
LSR1LSR1 SRT1Q03175 343 aa10.62□□□□□ -0.71
LSR1LSR1 EDE1P34216 1381 aa10.62□□□□□ -0.71
LSR1LSR1 MAM1P40065 302 aa10.61□□□□□ -0.71
LSR1LSR1 ZDS1P50111 915 aaKnown RBP10.6□□□□□ -0.71
LSR1LSR1 ROX1P25042 368 aa10.59□□□□□ -0.71
LSR1LSR1 YPP1P46951 817 aa10.58□□□□□ -0.72
LSR1LSR1 CSI1Q04368 295 aa10.57□□□□□ -0.72
LSR1LSR1 YMR196WQ04336 1088 aa10.56□□□□□ -0.72
LSR1LSR1 DJP1P40564 432 aa10.55□□□□□ -0.72
LSR1LSR1 BMS1Q08965 1183 aaKnown RBP10.55□□□□□ -0.72
LSR1LSR1 COQ4O13525 335 aa10.54□□□□□ -0.72
LSR1LSR1 RPS19AP07280 144 aaKnown RBP10.54□□□□□ -0.72
LSR1LSR1 RPS19BP07281 144 aaPredicted RBP10.54□□□□□ -0.72
LSR1LSR1 YBR287WP38355 427 aa10.54□□□□□ -0.72
LSR1LSR1 ECM16Q04217 1267 aaKnown RBP10.54□□□□□ -0.72
LSR1LSR1 HSP104P31539 908 aaKnown RBP10.53□□□□□ -0.72
LSR1LSR1 EBP2P36049 427 aaKnown RBP10.53□□□□□ -0.72
LSR1LSR1 YNG2P38806 282 aaKnown RBP10.53□□□□□ -0.72
LSR1LSR1 SPO1P53541 631 aa10.53□□□□□ -0.72
LSR1LSR1 LSP1Q12230 341 aaKnown RBP10.53□□□□□ -0.72
LSR1LSR1 VPS24P36095 224 aaKnown RBP10.52□□□□□ -0.73
LSR1LSR1 THI12P42883 340 aa10.52□□□□□ -0.73
LSR1LSR1 THI5P43534 340 aa10.52□□□□□ -0.73
LSR1LSR1 THI11P47183 340 aa10.52□□□□□ -0.73
LSR1LSR1 NKP2Q06162 153 aa10.52□□□□□ -0.73
LSR1LSR1 AOS1Q06624 347 aa10.52□□□□□ -0.73
LSR1LSR1 THI13Q07748 340 aa10.52□□□□□ -0.73
LSR1LSR1 CTF4Q01454 927 aa10.51□□□□□ -0.73
LSR1LSR1 RLF2Q12495 606 aa10.51□□□□□ -0.73
LSR1LSR1 RAD50P12753 1312 aa10.51□□□□□ -0.73
LSR1LSR1 DUR1,2P32528 1835 aaKnown RBP10.51□□□□□ -0.73
LSR1LSR1 LYS2P07702 1392 aa10.51□□□□□ -0.73
LSR1LSR1 MSP1P28737 362 aa10.5□□□□□ -0.73
LSR1LSR1 SLM3Q12093 417 aa10.5□□□□□ -0.73
LSR1LSR1 MNN4P36044 1178 aa10.49□□□□□ -0.73
LSR1LSR1 SLN1P39928 1220 aaPredicted RBP10.49□□□□□ -0.73
LSR1LSR1 RAD24P32641 659 aa10.48□□□□□ -0.73
LSR1LSR1 PRP5P21372 849 aaPredicted RBP10.47□□□□□ -0.73
LSR1LSR1 UGA3P26370 528 aa10.47□□□□□ -0.73
LSR1LSR1 DLD1P32891 587 aa10.47□□□□□ -0.73
LSR1LSR1 YGR122WP53272 402 aa10.47□□□□□ -0.73
LSR1LSR1 GCR2Q01722 534 aa10.47□□□□□ -0.73
LSR1LSR1 GCD7P32502 381 aaPredicted RBP10.46□□□□□ -0.73
LSR1LSR1 NMD2P38798 1089 aaKnown RBP10.46□□□□□ -0.73
LSR1LSR1 MSB3P48566 633 aaPredicted RBP10.46□□□□□ -0.73
LSR1LSR1 YOL057WQ08225 711 aa10.46□□□□□ -0.73
LSR1LSR1 ROM2P51862 1356 aaKnown RBP10.45□□□□□ -0.74
LSR1LSR1 NUP145P49687 1317 aa10.45□□□□□ -0.74
LSR1LSR1 BRN1P38170 754 aa10.45□□□□□ -0.74
LSR1LSR1 RFC1P38630 861 aaKnown RBP10.45□□□□□ -0.74
LSR1LSR1 YDR306CQ06640 478 aa10.45□□□□□ -0.74
LSR1LSR1 CDC16P09798 840 aa10.44□□□□□ -0.74
LSR1LSR1 RCR1P38212 213 aa10.44□□□□□ -0.74
LSR1LSR1 NSE3Q05541 303 aa10.44□□□□□ -0.74
LSR1LSR1 YRF1-3P0CX14 1859 aa10.44□□□□□ -0.74
LSR1LSR1 YRF1-7P0CX15 1859 aa10.44□□□□□ -0.74
LSR1LSR1 YRF1-6P53819 1859 aa10.44□□□□□ -0.74
LSR1LSR1 SRS2P12954 1174 aa10.43□□□□□ -0.74
LSR1LSR1 KCC4P25389 1037 aa10.43□□□□□ -0.74
LSR1LSR1 ITC1P53125 1264 aa10.43□□□□□ -0.74
LSR1LSR1 MRP7P12687 371 aa10.42□□□□□ -0.74
LSR1LSR1 TEA1P47988 759 aa10.42□□□□□ -0.74
LSR1LSR1 INP54Q08227 384 aaKnown RBP10.42□□□□□ -0.74
LSR1LSR1 RAD4P14736 754 aa10.41□□□□□ -0.74
LSR1LSR1 PRP45P28004 379 aaPredicted RBP10.41□□□□□ -0.74
LSR1LSR1 SPT21P35209 758 aa10.41□□□□□ -0.74
LSR1LSR1 HXT13P39924 564 aa10.41□□□□□ -0.74
LSR1LSR1 BOI2P39969 1040 aa10.41□□□□□ -0.74
LSR1LSR1 XKS1P42826 600 aa10.41□□□□□ -0.74
LSR1LSR1 KNS1P32350 737 aaPredicted RBP10.4□□□□□ -0.74
LSR1LSR1 SWC3P31376 625 aa10.39□□□□□ -0.75
LSR1LSR1 ARL1P38116 183 aaKnown RBP10.39□□□□□ -0.75
LSR1LSR1 HGH1P48362 394 aaKnown RBP10.39□□□□□ -0.75
LSR1LSR1 HXT17P53631 564 aa10.39□□□□□ -0.75
LSR1LSR1 PTP3P40048 928 aa10.38□□□□□ -0.75
LSR1LSR1 HAP5Q02516 242 aa10.38□□□□□ -0.75
LSR1LSR1 NOP8Q08287 484 aaPredicted RBP10.38□□□□□ -0.75
LSR1LSR1 TCB1Q12466 1186 aa10.37□□□□□ -0.75
LSR1LSR1 RSF2P46974 1380 aa10.37□□□□□ -0.75
LSR1LSR1 NPA3P47122 385 aa10.36□□□□□ -0.75
LSR1LSR1 TCB2P48231 1178 aa10.36□□□□□ -0.75
LSR1LSR1 ZDS2P54786 942 aa10.36□□□□□ -0.75
LSR1LSR1 NOT3P06102 836 aaKnown RBP10.35□□□□□ -0.75
LSR1LSR1 TRL1P09880 827 aaKnown RBP10.35□□□□□ -0.75
LSR1LSR1 ALE1Q08548 619 aa10.35□□□□□ -0.75
LSR1LSR1 SWI1P09547 1314 aa10.34□□□□□ -0.75
LSR1LSR1 YJR008WP47085 338 aa10.34□□□□□ -0.75
LSR1LSR1 BDH2P39713 417 aa10.33□□□□□ -0.76
LSR1LSR1 CST6P40535 587 aa10.32□□□□□ -0.76
LSR1LSR1 DNM1P54861 757 aa10.32□□□□□ -0.76
LSR1LSR1 VPS20Q04272 221 aa10.32□□□□□ -0.76
LSR1LSR1 VAS1P07806 1104 aaKnown RBP10.31□□□□□ -0.76
LSR1LSR1 RNR2P09938 399 aaKnown RBP10.31□□□□□ -0.76
LSR1LSR1 NUP133P36161 1157 aa10.31□□□□□ -0.76
Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms