RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NKX1-1Q15270 411 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-213ENST00000476903 BCL2L12Q9HB09 334 aa12.39□□□□□ -0.43
CCDC88A-213ENST00000476903 CRISPLD2Q9H0B8 497 aa12.38□□□□□ -0.43
CCDC88A-213ENST00000476903 URB2Q14146 1524 aaKnown RBP12.37□□□□□ -0.43
CCDC88A-213ENST00000476903 IFFO2Q5TF58 517 aa12.36□□□□□ -0.43
CCDC88A-213ENST00000476903 STAC3Q96MF2 364 aa12.36□□□□□ -0.43
CCDC88A-213ENST00000476903 FOSBP53539 338 aa12.35□□□□□ -0.43
CCDC88A-213ENST00000476903 ZNF454Q8N9F8 522 aa12.35□□□□□ -0.43
CCDC88A-213ENST00000476903 UPF1Q92900 1129 aaKnown RBP eCLIP12.35□□□□□ -0.43
CCDC88A-213ENST00000476903 PTPN5P54829 565 aa12.34□□□□□ -0.43
CCDC88A-213ENST00000476903 KCNH8Q96L42 1107 aa12.33□□□□□ -0.44
CCDC88A-213ENST00000476903 ANO8Q9HCE9 1232 aaPredicted RBP12.33□□□□□ -0.44
CCDC88A-213ENST00000476903 THSD4Q6ZMP0 1018 aa12.32□□□□□ -0.44
CCDC88A-213ENST00000476903 ZBED2Q9BTP6 218 aa12.32□□□□□ -0.44
CCDC88A-213ENST00000476903 PPP1R15BQ5SWA1 713 aa12.3□□□□□ -0.44
CCDC88A-213ENST00000476903 NCKAP5LQ9HCH0 1330 aa12.3□□□□□ -0.44
CCDC88A-213ENST00000476903 CHGAP10645 457 aaKnown RBP12.29□□□□□ -0.44
CCDC88A-213ENST00000476903 ABCC8Q09428 1581 aa12.28□□□□□ -0.44
CCDC88A-213ENST00000476903 RGS20O76081 388 aa12.28□□□□□ -0.44
CCDC88A-213ENST00000476903 TOPBP1Q92547 1522 aa12.27□□□□□ -0.44
CCDC88A-213ENST00000476903 DNMBPQ6XZF7 1577 aa12.26□□□□□ -0.45
CCDC88A-213ENST00000476903 PTPREP23469 700 aa12.26□□□□□ -0.45
CCDC88A-213ENST00000476903 JPH4Q96JJ6 628 aa12.25□□□□□ -0.45
CCDC88A-213ENST00000476903 ADAM33Q9BZ11 813 aa12.25□□□□□ -0.45
CCDC88A-213ENST00000476903 IFT140Q96RY7 1462 aa12.25□□□□□ -0.45
CCDC88A-213ENST00000476903 A0A0G2JS52 829 aa12.24□□□□□ -0.45
CCDC88A-213ENST00000476903 WNT2BQ93097 391 aa12.22□□□□□ -0.45
CCDC88A-213ENST00000476903 SUPT5HO00267 1087 aaKnown RBP12.21□□□□□ -0.45
CCDC88A-213ENST00000476903 EVI5O60447 810 aa12.21□□□□□ -0.45
CCDC88A-213ENST00000476903 ZDHHC16Q969W1 377 aa12.21□□□□□ -0.45
CCDC88A-213ENST00000476903 MRPL50Q8N5N7 158 aaKnown RBP12.2□□□□□ -0.46
CCDC88A-213ENST00000476903 PDE4AP27815 886 aa12.19□□□□□ -0.46
CCDC88A-213ENST00000476903 ZNF608Q9ULD9 1512 aaPredicted RBP12.19□□□□□ -0.46
CCDC88A-213ENST00000476903 RYDENQ9NUL5 291 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-213ENST00000476903 TARBP1Q13395 1621 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-213ENST00000476903 EIF4G3O43432 1585 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-213ENST00000476903 POLA1P09884 1462 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-213ENST00000476903 GOLGA8CPA6NN73 597 aa12.15□□□□□ -0.46
CCDC88A-213ENST00000476903 IRX2Q9BZI1 471 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-213ENST00000476903 GTPBP6O43824 516 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-213ENST00000476903 MFSD10Q14728 455 aa12.13□□□□□ -0.47
CCDC88A-213ENST00000476903 NBPF3Q9H094 633 aa12.13□□□□□ -0.47
CCDC88A-213ENST00000476903 EMILIN3Q9NT22 766 aa12.13□□□□□ -0.47
CCDC88A-213ENST00000476903 PCDHGA10Q9Y5H3 936 aa12.13□□□□□ -0.47
CCDC88A-213ENST00000476903 CUX1P39880 1505 aa12.12□□□□□ -0.47
CCDC88A-213ENST00000476903 LARP6Q9BRS8 491 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-213ENST00000476903 COL9A1P20849 921 aa12.11□□□□□ -0.47
CCDC88A-213ENST00000476903 RABGEF1Q9UJ41 708 aa12.11□□□□□ -0.47
CCDC88A-213ENST00000476903 FGD5Q6ZNL6 1462 aa12.1□□□□□ -0.47
CCDC88A-213ENST00000476903 PPP1R3GB7ZBB8 358 aa12.1□□□□□ -0.47
CCDC88A-213ENST00000476903 ITGBL1O95965 494 aaPredicted RBP12.1□□□□□ -0.47
CCDC88A-213ENST00000476903 PROX2Q3B8N5 592 aa12.1□□□□□ -0.47
CCDC88A-213ENST00000476903 SOGA1O94964 1423 aa12.1□□□□□ -0.47
CCDC88A-213ENST00000476903 AQRO60306 1485 aaKnown RBP eCLIP12.09□□□□□ -0.47
CCDC88A-213ENST00000476903 RAD54L2Q9Y4B4 1467 aa12.09□□□□□ -0.47
CCDC88A-213ENST00000476903 WDR97A6NE52 1622 aa12.09□□□□□ -0.47
CCDC88A-213ENST00000476903 DDX27Q96GQ7 796 aaKnown RBP12.09□□□□□ -0.47
CCDC88A-213ENST00000476903 CHD1O14646 1710 aa12.07□□□□□ -0.48
CCDC88A-213ENST00000476903 MAP3K9P80192 1104 aa12.07□□□□□ -0.48
CCDC88A-213ENST00000476903 BCAMP50895 628 aa12.04□□□□□ -0.48
CCDC88A-213ENST00000476903 TDRD9Q8NDG6 1382 aaKnown RBP12.04□□□□□ -0.48
CCDC88A-213ENST00000476903 ANKK1Q8NFD2 765 aa12.03□□□□□ -0.48
CCDC88A-213ENST00000476903 SOWAHBA6NEL2 793 aa12.02□□□□□ -0.49
CCDC88A-213ENST00000476903 LAPTM4BQ86VI4 370 aa12.02□□□□□ -0.49
CCDC88A-213ENST00000476903 PHF14O94880 888 aa12.01□□□□□ -0.49
CCDC88A-213ENST00000476903 RIMBP3CA6NJZ7 1639 aa12□□□□□ -0.49
CCDC88A-213ENST00000476903 RIMBP3BA6NNM3 1639 aa12□□□□□ -0.49
CCDC88A-213ENST00000476903 RIMBP3Q9UFD9 1639 aa12□□□□□ -0.49
CCDC88A-213ENST00000476903 BIVM-ERCC5R4GMW8 1640 aa12□□□□□ -0.49
CCDC88A-213ENST00000476903 PBRM1Q86U86 1689 aa12□□□□□ -0.49
CCDC88A-213ENST00000476903 TYW1BQ6NUM6 668 aa12□□□□□ -0.49
CCDC88A-213ENST00000476903 SNAPC4Q5SXM2 1469 aa12□□□□□ -0.49
CCDC88A-213ENST00000476903 CADPS2Q86UW7 1296 aa11.99□□□□□ -0.49
CCDC88A-213ENST00000476903 FBXW7Q969H0 707 aa11.99□□□□□ -0.49
CCDC88A-213ENST00000476903 KIAA1468Q9P260 1216 aa11.99□□□□□ -0.49
CCDC88A-213ENST00000476903 GRIN2BQ13224 1484 aa11.99□□□□□ -0.49
CCDC88A-213ENST00000476903 MAGI1Q96QZ7 1491 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-213ENST00000476903 TOP2BQ02880 1626 aa11.99□□□□□ -0.49
CCDC88A-213ENST00000476903 ABCA10Q8WWZ4 1543 aa11.98□□□□□ -0.49
CCDC88A-213ENST00000476903 ONECUT3O60422 494 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-213ENST00000476903 ZFRQ96KR1 1074 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-213ENST00000476903 ABCA5Q8WWZ7 1642 aa11.97□□□□□ -0.49
CCDC88A-213ENST00000476903 WRNQ14191 1432 aaPredicted RBP eCLIP11.97□□□□□ -0.49
CCDC88A-213ENST00000476903 WBP1LQ9NX94 342 aa11.97□□□□□ -0.49
CCDC88A-213ENST00000476903 SYNJ1O43426 1573 aa11.96□□□□□ -0.49
CCDC88A-213ENST00000476903 GAPVD1Q14C86 1478 aa11.96□□□□□ -0.49
CCDC88A-213ENST00000476903 ARHGEF11O15085 1522 aa11.96□□□□□ -0.5
CCDC88A-213ENST00000476903 C6orf132Q5T0Z8 1188 aa11.94□□□□□ -0.5
CCDC88A-213ENST00000476903 NYAP1Q6ZVC0 841 aa11.94□□□□□ -0.5
CCDC88A-213ENST00000476903 SYNJ2O15056 1496 aa11.94□□□□□ -0.5
CCDC88A-213ENST00000476903 CAMK2BQ13554 666 aa11.93□□□□□ -0.5
CCDC88A-213ENST00000476903 CHMP7Q8WUX9 453 aaPredicted RBP11.93□□□□□ -0.5
CCDC88A-213ENST00000476903 SEPT9Q9UHD8 586 aaPredicted RBP11.92□□□□□ -0.5
CCDC88A-213ENST00000476903 CLASP1Q7Z460 1538 aa11.91□□□□□ -0.5
CCDC88A-213ENST00000476903 TRIM6-TRIM34B2RNG4 842 aa11.9□□□□□ -0.5
CCDC88A-213ENST00000476903 KCNC4Q03721 635 aa11.9□□□□□ -0.5
CCDC88A-213ENST00000476903 LCE2BO14633 110 aa11.89□□□□□ -0.51
CCDC88A-213ENST00000476903 EPAS1Q99814 870 aa11.89□□□□□ -0.51
CCDC88A-213ENST00000476903 FAM98CQ17RN3 349 aaKnown RBP11.87□□□□□ -0.51
CCDC88A-213ENST00000476903 ADAMTS12P58397 1594 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms