RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 AEBP2Q6ZN18 517 aaPredicted RBP30.75■■■□□ 2.51
CCDC88A-213ENST00000476903 CHIC1Q5VXU3 224 aa28.82■■■□□ 2.2
CCDC88A-213ENST00000476903 SENP3Q9H4L4 574 aaPredicted RBP26.14■■□□□ 1.78
CCDC88A-213ENST00000476903 PHF23Q9BUL5 403 aaPredicted RBP25.81■■□□□ 1.72
CCDC88A-213ENST00000476903 FOXD1Q16676 465 aa24.5■■□□□ 1.51
CCDC88A-213ENST00000476903 POTEDQ86YR6 584 aa23.03■■□□□ 1.28
CCDC88A-213ENST00000476903 MSH5O43196 834 aa22.94■■□□□ 1.26
CCDC88A-213ENST00000476903 PLPPR3Q6T4P5 718 aa22.81■■□□□ 1.24
CCDC88A-213ENST00000476903 PIAS4Q8N2W9 510 aaPredicted RBP22.71■■□□□ 1.23
CCDC88A-213ENST00000476903 PPP6R1Q9UPN7 881 aa22.7■■□□□ 1.22
CCDC88A-213ENST00000476903 ADRA2BP18089 450 aa22.55■■□□□ 1.2
CCDC88A-213ENST00000476903 MAPK8IP2Q13387 824 aaPredicted RBP20.85■□□□□ 0.93
CCDC88A-213ENST00000476903 DMRT2Q9Y5R5 561 aa20.74■□□□□ 0.91
CCDC88A-213ENST00000476903 SCAF1Q9H7N4 1312 aaKnown RBP20.5■□□□□ 0.87
CCDC88A-213ENST00000476903 PPP4R3CPQ6ZMV5 832 aa19.99■□□□□ 0.79
CCDC88A-213ENST00000476903 HOXD11P31277 338 aaPredicted RBP19.87■□□□□ 0.77
CCDC88A-213ENST00000476903 CACNB1Q02641 598 aaPredicted RBP19.86■□□□□ 0.77
CCDC88A-213ENST00000476903 DCAF8L1A6NGE4 600 aa19.75■□□□□ 0.75
CCDC88A-213ENST00000476903 CNKSR2Q8WXI2 1034 aa19.66■□□□□ 0.74
CCDC88A-213ENST00000476903 RNF39Q9H2S5 420 aa19.62■□□□□ 0.73
CCDC88A-213ENST00000476903 RNF216Q9NWF9 866 aaPredicted RBP19.59■□□□□ 0.73
CCDC88A-213ENST00000476903 C1QBPQ07021 282 aaKnown RBP19.26■□□□□ 0.67
CCDC88A-213ENST00000476903 DNAJC5BQ9UF47 199 aa19.24■□□□□ 0.67
CCDC88A-213ENST00000476903 NCBP3Q53F19 620 aaKnown RBP19.02■□□□□ 0.64
CCDC88A-213ENST00000476903 NPM3O75607 178 aaKnown RBP18.87■□□□□ 0.61
CCDC88A-213ENST00000476903 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.8■□□□□ 0.6
CCDC88A-213ENST00000476903 U3KPZ7 1027 aaPredicted RBP18.49■□□□□ 0.55
CCDC88A-213ENST00000476903 SPINK5Q9NQ38 1064 aaPredicted RBP18.32■□□□□ 0.52
CCDC88A-213ENST00000476903 DSG3P32926 999 aa18.27■□□□□ 0.52
CCDC88A-213ENST00000476903 KCNA4P22459 653 aa18.23■□□□□ 0.51
CCDC88A-213ENST00000476903 CAPN15O75808 1086 aa18.18■□□□□ 0.5
CCDC88A-213ENST00000476903 SLC4A2P04920 1241 aa18.17■□□□□ 0.5
CCDC88A-213ENST00000476903 POTEHQ6S545 545 aa17.93■□□□□ 0.46
CCDC88A-213ENST00000476903 TRHP20396 242 aaPredicted RBP17.83■□□□□ 0.44
CCDC88A-213ENST00000476903 ABCB7O75027 752 aa17.78■□□□□ 0.44
CCDC88A-213ENST00000476903 ZNF219Q9P2Y4 722 aaPredicted RBP17.77■□□□□ 0.44
CCDC88A-213ENST00000476903 APLP2Q06481 763 aa17.75■□□□□ 0.43
CCDC88A-213ENST00000476903 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.7■□□□□ 0.42
CCDC88A-213ENST00000476903 HNRNPUL2Q1KMD3 747 aaKnown RBP17.7■□□□□ 0.42
CCDC88A-213ENST00000476903 SAMD1Q6SPF0 538 aaPredicted RBP17.62■□□□□ 0.41
CCDC88A-213ENST00000476903 MYCNP04198 464 aaPredicted RBP17.39■□□□□ 0.37
CCDC88A-213ENST00000476903 POLA2Q14181 598 aa17.33■□□□□ 0.36
CCDC88A-213ENST00000476903 RBM42Q9BTD8 480 aaKnown RBP17.32■□□□□ 0.36
CCDC88A-213ENST00000476903 ATF5Q9Y2D1 282 aaPredicted RBP17.14■□□□□ 0.33
CCDC88A-213ENST00000476903 CHRDL2Q6WN34 429 aa17.13■□□□□ 0.33
CCDC88A-213ENST00000476903 SLC4A1APQ9BWU0 796 aaKnown RBP17.07■□□□□ 0.32
CCDC88A-213ENST00000476903 FOXD4L1Q9NU39 408 aa17.06■□□□□ 0.32
CCDC88A-213ENST00000476903 AKT1S1Q96B36 256 aa16.91■□□□□ 0.3
CCDC88A-213ENST00000476903 ZBTB12Q9Y330 459 aaPredicted RBP16.86■□□□□ 0.29
CCDC88A-213ENST00000476903 ZBTB22O15209 634 aa16.83■□□□□ 0.28
CCDC88A-213ENST00000476903 REM2Q8IYK8 340 aaPredicted RBP16.79■□□□□ 0.28
CCDC88A-213ENST00000476903 OSCARQ8IYS5 282 aa16.78■□□□□ 0.28
CCDC88A-213ENST00000476903 NISCHQ9Y2I1 1504 aa16.75■□□□□ 0.27
CCDC88A-213ENST00000476903 PIP4P2Q8N4L2 257 aa16.69■□□□□ 0.26
CCDC88A-213ENST00000476903 SP7Q8TDD2 431 aaPredicted RBP16.65■□□□□ 0.26
CCDC88A-213ENST00000476903 PITPNM1O00562 1244 aa16.61■□□□□ 0.25
CCDC88A-213ENST00000476903 ATXN8OSP0DMR3 200 aa16.57■□□□□ 0.24
CCDC88A-213ENST00000476903 FXR2P51116 673 aaKnown RBP eCLIP16.56■□□□□ 0.24
CCDC88A-213ENST00000476903 HAX1O00165 279 aa16.39■□□□□ 0.21
CCDC88A-213ENST00000476903 SPDYE2BA6NHP3 402 aa16.37■□□□□ 0.21
CCDC88A-213ENST00000476903 SPDYE6P0CI01 402 aa16.37■□□□□ 0.21
CCDC88A-213ENST00000476903 SPDYE2Q495Y8 402 aa16.37■□□□□ 0.21
CCDC88A-213ENST00000476903 MKRN4PQ13434 485 aaPredicted RBP16.34■□□□□ 0.21
CCDC88A-213ENST00000476903 EVX2Q03828 476 aa16.33■□□□□ 0.2
CCDC88A-213ENST00000476903 FBLN2P98095 1184 aa16.31■□□□□ 0.2
CCDC88A-213ENST00000476903 SSUH2Q9Y2M2 353 aa16.19■□□□□ 0.18
CCDC88A-213ENST00000476903 PRKAR2AP13861 404 aaKnown RBP16.14■□□□□ 0.17
CCDC88A-213ENST00000476903 SPDYE1Q8NFV5 336 aaPredicted RBP16.14■□□□□ 0.17
CCDC88A-213ENST00000476903 ZNF692Q9BU19 519 aaPredicted RBP16.11■□□□□ 0.17
CCDC88A-213ENST00000476903 CLEC11AQ9Y240 323 aa16.11■□□□□ 0.17
CCDC88A-213ENST00000476903 C19orf67A6NJJ6 358 aa16.04■□□□□ 0.16
CCDC88A-213ENST00000476903 CHADLQ6NUI6 762 aa15.91■□□□□ 0.14
CCDC88A-213ENST00000476903 PABPN1Q86U42 306 aaKnown RBP eCLIP15.88■□□□□ 0.13
CCDC88A-213ENST00000476903 GABBR2O75899 941 aa15.86■□□□□ 0.13
CCDC88A-213ENST00000476903 PRR29P0C7W0 189 aa15.81■□□□□ 0.12
CCDC88A-213ENST00000476903 CSRNP3Q8WYN3 585 aa15.73■□□□□ 0.11
CCDC88A-213ENST00000476903 FARP1Q9Y4F1 1045 aaPredicted RBP15.64■□□□□ 0.09
CCDC88A-213ENST00000476903 LHX8Q68G74 356 aa15.62■□□□□ 0.09
CCDC88A-213ENST00000476903 POTEIP0CG38 1075 aa15.6■□□□□ 0.09
CCDC88A-213ENST00000476903 CD44P16070 742 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-213ENST00000476903 CREBZFQ9NS37 354 aa15.45■□□□□ 0.06
CCDC88A-213ENST00000476903 CLCN6P51797 869 aa15.43■□□□□ 0.06
CCDC88A-213ENST00000476903 ZNF579Q8NAF0 562 aaKnown RBP15.38■□□□□ 0.05
CCDC88A-213ENST00000476903 STAG3Q9UJ98 1225 aa15.33■□□□□ 0.04
CCDC88A-213ENST00000476903 ZRANB1Q9UGI0 708 aa15.32■□□□□ 0.04
CCDC88A-213ENST00000476903 SPDYE4A6NLX3 237 aa15.28■□□□□ 0.04
CCDC88A-213ENST00000476903 DCBLD2Q96PD2 775 aa15.26■□□□□ 0.03
CCDC88A-213ENST00000476903 GALR2O43603 387 aaPredicted RBP15.23■□□□□ 0.03
CCDC88A-213ENST00000476903 EHMT2Q96KQ7 1210 aa15.22■□□□□ 0.03
CCDC88A-213ENST00000476903 MNX1P50219 401 aaPredicted RBP15.19■□□□□ 0.02
CCDC88A-213ENST00000476903 PHF12Q96QT6 1004 aa15.13■□□□□ 0.01
CCDC88A-213ENST00000476903 POTEB2H3BUK9 544 aa15.08■□□□□ 0
CCDC88A-213ENST00000476903 OTUD5Q96G74 571 aa15.04■□□□□ -0
CCDC88A-213ENST00000476903 PAK3O75914 559 aaPredicted RBP15.03■□□□□ -0
CCDC88A-213ENST00000476903 PELP1Q8IZL8 1130 aaKnown RBP15.03■□□□□ -0
CCDC88A-213ENST00000476903 NPM1P06748 294 aaKnown RBP eCLIP15.02■□□□□ -0
CCDC88A-213ENST00000476903 CCDC180Q9P1Z9 1646 aa15.02□□□□□ -0.01
CCDC88A-213ENST00000476903 PROM2Q8N271 834 aa14.99□□□□□ -0.01
CCDC88A-213ENST00000476903 MS4A3Q96HJ5 214 aa14.91□□□□□ -0.02
CCDC88A-213ENST00000476903 ASTLQ6HA08 431 aaPredicted RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms