RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 AXDND1Q5T1B0 1012 aaPredicted RBP14.76□□□□□ -0.05
NPHP4-202ENST00000378161 GRPEL1Q9HAV7 217 aa14.76□□□□□ -0.05
NPHP4-202ENST00000378161 GOLGA6L6A8MZA4 724 aa14.76□□□□□ -0.05
NPHP4-202ENST00000378161 ZSCAN30Q86W11 494 aa14.75□□□□□ -0.05
NPHP4-202ENST00000378161 MPHOSPH9Q99550 1183 aa14.75□□□□□ -0.05
NPHP4-202ENST00000378161 CNPY4Q8N129 248 aa14.75□□□□□ -0.05
NPHP4-202ENST00000378161 FHOD3Q2V2M9 1422 aa14.75□□□□□ -0.05
NPHP4-202ENST00000378161 SENP3-EIF4A1A0A087X0R7 540 aa14.74□□□□□ -0.05
NPHP4-202ENST00000378161 PRDM4Q9UKN5 801 aa14.74□□□□□ -0.05
NPHP4-202ENST00000378161 DYNC1I1O14576 645 aa14.74□□□□□ -0.05
NPHP4-202ENST00000378161 CCDC9Q9Y3X0 531 aaKnown RBP14.74□□□□□ -0.05
NPHP4-202ENST00000378161 RRBP1Q9P2E9 1410 aaKnown RBP14.73□□□□□ -0.05
NPHP4-202ENST00000378161 CALRP27797 417 aaKnown RBP14.73□□□□□ -0.05
NPHP4-202ENST00000378161 XRCC6P12956 609 aaKnown RBP eCLIP14.73□□□□□ -0.05
NPHP4-202ENST00000378161 ERCC6Q03468 1493 aa14.73□□□□□ -0.05
NPHP4-202ENST00000378161 CCDC173Q0VFZ6 552 aa14.72□□□□□ -0.05
NPHP4-202ENST00000378161 CADPSQ9ULU8 1353 aa14.72□□□□□ -0.05
NPHP4-202ENST00000378161 DMTNQ08495 405 aa14.72□□□□□ -0.05
NPHP4-202ENST00000378161 CCDC94Q9BW85 323 aaPredicted RBP14.72□□□□□ -0.05
NPHP4-202ENST00000378161 RGL3Q3MIN7 710 aa14.71□□□□□ -0.05
NPHP4-202ENST00000378161 ERICH3Q5RHP9 1530 aa14.71□□□□□ -0.05
NPHP4-202ENST00000378161 TRAK2O60296 914 aa14.71□□□□□ -0.06
NPHP4-202ENST00000378161 L3MBTL2Q969R5 705 aa14.71□□□□□ -0.06
NPHP4-202ENST00000378161 GOLGA6L1Q8N7Z2 621 aa14.7□□□□□ -0.06
NPHP4-202ENST00000378161 TDRD9Q8NDG6 1382 aaKnown RBP14.7□□□□□ -0.06
NPHP4-202ENST00000378161 SYNJ1O43426 1573 aa14.69□□□□□ -0.06
NPHP4-202ENST00000378161 SKOR2Q2VWA4 1001 aaPredicted RBP14.69□□□□□ -0.06
NPHP4-202ENST00000378161 KIF3AQ9Y496 699 aa14.69□□□□□ -0.06
NPHP4-202ENST00000378161 EXOC6Q8TAG9 804 aa14.69□□□□□ -0.06
NPHP4-202ENST00000378161 NPM1P06748 294 aaKnown RBP eCLIP14.68□□□□□ -0.06
NPHP4-202ENST00000378161 HMGN5P82970 282 aaKnown RBP14.68□□□□□ -0.06
NPHP4-202ENST00000378161 CDCA8Q53HL2 280 aa14.68□□□□□ -0.06
NPHP4-202ENST00000378161 HSCBQ8IWL3 235 aa14.68□□□□□ -0.06
NPHP4-202ENST00000378161 FOXD1Q16676 465 aa14.68□□□□□ -0.06
NPHP4-202ENST00000378161 IGF1RP08069 1367 aa14.68□□□□□ -0.06
NPHP4-202ENST00000378161 EIF4G1Q04637 1599 aaKnown RBP14.67□□□□□ -0.06
NPHP4-202ENST00000378161 TIGD1Q96MW7 591 aa14.67□□□□□ -0.06
NPHP4-202ENST00000378161 ARAP1Q96P48 1450 aa14.67□□□□□ -0.06
NPHP4-202ENST00000378161 NASPP49321 788 aaPredicted RBP14.67□□□□□ -0.06
NPHP4-202ENST00000378161 ZNF622Q969S3 477 aaKnown RBP eCLIP14.67□□□□□ -0.06
NPHP4-202ENST00000378161 KNSTRNQ9Y448 316 aa14.67□□□□□ -0.06
NPHP4-202ENST00000378161 RCAN3Q9UKA8 241 aa14.66□□□□□ -0.06
NPHP4-202ENST00000378161 PANK2Q9BZ23 570 aa14.66□□□□□ -0.06
NPHP4-202ENST00000378161 CALCOCO1Q9P1Z2 691 aa14.66□□□□□ -0.06
NPHP4-202ENST00000378161 OFD1O75665 1012 aa14.66□□□□□ -0.06
NPHP4-202ENST00000378161 CCDC18Q5T9S5 1454 aa14.65□□□□□ -0.06
NPHP4-202ENST00000378161 TERF1P54274 439 aa14.65□□□□□ -0.06
NPHP4-202ENST00000378161 PLPPR3Q6T4P5 718 aa14.65□□□□□ -0.06
NPHP4-202ENST00000378161 CHGAP10645 457 aaKnown RBP14.64□□□□□ -0.07
NPHP4-202ENST00000378161 SASS6Q6UVJ0 657 aa14.64□□□□□ -0.07
NPHP4-202ENST00000378161 PRXQ9BXM0 1461 aa14.64□□□□□ -0.07
NPHP4-202ENST00000378161 PRKRIP1Q9H875 184 aaPredicted RBP14.64□□□□□ -0.07
NPHP4-202ENST00000378161 PHLDB1Q86UU1 1377 aa14.64□□□□□ -0.07
NPHP4-202ENST00000378161 LRRC9Q6ZRR7 1453 aa14.63□□□□□ -0.07
NPHP4-202ENST00000378161 PKD2Q13563 968 aa14.63□□□□□ -0.07
NPHP4-202ENST00000378161 PDS5BQ9NTI5 1447 aa14.63□□□□□ -0.07
NPHP4-202ENST00000378161 ZNF830Q96NB3 372 aaPredicted RBP14.63□□□□□ -0.07
NPHP4-202ENST00000378161 CHMP5Q9NZZ3 219 aa14.63□□□□□ -0.07
NPHP4-202ENST00000378161 HSP90AB1P08238 724 aaKnown RBP14.63□□□□□ -0.07
NPHP4-202ENST00000378161 LMOD3Q0VAK6 560 aa14.61□□□□□ -0.07
NPHP4-202ENST00000378161 NBPF1Q3BBV0 1214 aa14.61□□□□□ -0.07
NPHP4-202ENST00000378161 RALBP1Q15311 655 aa14.61□□□□□ -0.07
NPHP4-202ENST00000378161 CERS3Q8IU89 383 aa14.61□□□□□ -0.07
NPHP4-202ENST00000378161 TRIM6-TRIM34B2RNG4 842 aa14.61□□□□□ -0.07
NPHP4-202ENST00000378161 TRIM34Q9BYJ4 488 aa14.61□□□□□ -0.07
NPHP4-202ENST00000378161 PDCL2Q8N4E4 241 aa14.6□□□□□ -0.07
NPHP4-202ENST00000378161 RRP1P56182 461 aaKnown RBP14.6□□□□□ -0.07
NPHP4-202ENST00000378161 PLCD4Q9BRC7 762 aa14.59□□□□□ -0.07
NPHP4-202ENST00000378161 MCM4P33991 863 aa14.59□□□□□ -0.07
NPHP4-202ENST00000378161 UACAQ9BZF9 1416 aa14.59□□□□□ -0.07
NPHP4-202ENST00000378161 FGD6Q6ZV73 1430 aa14.58□□□□□ -0.07
NPHP4-202ENST00000378161 GTF2A1P52655 376 aaPredicted RBP14.58□□□□□ -0.07
NPHP4-202ENST00000378161 TMF1P82094 1093 aa14.58□□□□□ -0.08
NPHP4-202ENST00000378161 ROCK2O75116 1388 aaKnown RBP14.57□□□□□ -0.08
NPHP4-202ENST00000378161 SAMD1Q6SPF0 538 aaPredicted RBP14.57□□□□□ -0.08
NPHP4-202ENST00000378161 KTN1Q86UP2 1357 aaKnown RBP14.57□□□□□ -0.08
NPHP4-202ENST00000378161 CCDC39Q9UFE4 941 aa14.57□□□□□ -0.08
NPHP4-202ENST00000378161 NOM1Q5C9Z4 860 aaKnown RBP14.56□□□□□ -0.08
NPHP4-202ENST00000378161 DIAPH3Q9NSV4 1193 aa14.56□□□□□ -0.08
NPHP4-202ENST00000378161 HMGB1P09429 215 aaKnown RBP14.56□□□□□ -0.08
NPHP4-202ENST00000378161 PLCB2Q00722 1185 aa14.56□□□□□ -0.08
NPHP4-202ENST00000378161 CENPQQ7L2Z9 268 aaPredicted RBP14.56□□□□□ -0.08
NPHP4-202ENST00000378161 GPATCH11Q8N954 259 aa14.56□□□□□ -0.08
NPHP4-202ENST00000378161 BANK1Q8NDB2 785 aa14.56□□□□□ -0.08
NPHP4-202ENST00000378161 TOP2BQ02880 1626 aa14.56□□□□□ -0.08
NPHP4-202ENST00000378161 DDX49Q9Y6V7 483 aaKnown RBP14.55□□□□□ -0.08
NPHP4-202ENST00000378161 XPCQ01831 940 aaPredicted RBP14.55□□□□□ -0.08
NPHP4-202ENST00000378161 NCAPD3P42695 1498 aa14.55□□□□□ -0.08
NPHP4-202ENST00000378161 ERICH4A6NGS2 130 aa14.54□□□□□ -0.08
NPHP4-202ENST00000378161 TRERF1Q96PN7 1200 aa14.54□□□□□ -0.08
NPHP4-202ENST00000378161 ANKRD30AQ9BXX3 1397 aa14.54□□□□□ -0.08
NPHP4-202ENST00000378161 PDE3BQ13370 1112 aa14.54□□□□□ -0.08
NPHP4-202ENST00000378161 FGD5Q6ZNL6 1462 aa14.54□□□□□ -0.08
NPHP4-202ENST00000378161 TMEM51Q9NW97 253 aa14.54□□□□□ -0.08
NPHP4-202ENST00000378161 SPDYE4A6NLX3 237 aa14.53□□□□□ -0.08
NPHP4-202ENST00000378161 TEX35Q5T0J7 233 aa14.53□□□□□ -0.08
NPHP4-202ENST00000378161 DEF6Q9H4E7 631 aa14.53□□□□□ -0.08
NPHP4-202ENST00000378161 IGSF3O75054 1194 aa14.52□□□□□ -0.08
NPHP4-202ENST00000378161 NUP155O75694 1391 aa14.52□□□□□ -0.08
NPHP4-202ENST00000378161 NLRP13Q86W25 1043 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 213.4 ms