RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 PELP1Q8IZL8 1130 aaKnown RBP20.78■□□□□ 0.92
NPHP4-202ENST00000378161 MYT1Q01538 1121 aa20.59■□□□□ 0.89
NPHP4-202ENST00000378161 NISCHQ9Y2I1 1504 aa20.02■□□□□ 0.8
NPHP4-202ENST00000378161 TTBK1Q5TCY1 1321 aaPredicted RBP19.36■□□□□ 0.69
NPHP4-202ENST00000378161 HRCP23327 699 aa19.03■□□□□ 0.64
NPHP4-202ENST00000378161 DCAF8L2P0C7V8 631 aa18.99■□□□□ 0.63
NPHP4-202ENST00000378161 ERICH6Q7L0X2 663 aa18.81■□□□□ 0.6
NPHP4-202ENST00000378161 SUPT5HO00267 1087 aaKnown RBP18.67■□□□□ 0.58
NPHP4-202ENST00000378161 CENPBP07199 599 aaPredicted RBP18.62■□□□□ 0.57
NPHP4-202ENST00000378161 PCGF6Q9BYE7 350 aa18.59■□□□□ 0.57
NPHP4-202ENST00000378161 PPARGC1BQ86YN6 1023 aaKnown RBP18.48■□□□□ 0.55
NPHP4-202ENST00000378161 SHROOM4Q9ULL8 1493 aa18.48■□□□□ 0.55
NPHP4-202ENST00000378161 SCAF1Q9H7N4 1312 aaKnown RBP18.34■□□□□ 0.53
NPHP4-202ENST00000378161 BCL11AQ9H165 835 aa18.29■□□□□ 0.52
NPHP4-202ENST00000378161 ZEB1P37275 1124 aaPredicted RBP18.26■□□□□ 0.51
NPHP4-202ENST00000378161 PRKCSHP14314 528 aaPredicted RBP18.15■□□□□ 0.5
NPHP4-202ENST00000378161 GTF3C3Q9Y5Q9 886 aa18.09■□□□□ 0.49
NPHP4-202ENST00000378161 ACIN1Q9UKV3 1341 aaKnown RBP18.01■□□□□ 0.47
NPHP4-202ENST00000378161 FAM9AQ8IZU1 332 aaPredicted RBP17.75■□□□□ 0.43
NPHP4-202ENST00000378161 ANP32EQ9BTT0 268 aa17.71■□□□□ 0.43
NPHP4-202ENST00000378161 SLC24A1O60721 1099 aa17.7■□□□□ 0.42
NPHP4-202ENST00000378161 NEUROD1Q13562 356 aa17.69■□□□□ 0.42
NPHP4-202ENST00000378161 YTHDC1Q96MU7 727 aaKnown RBP17.68■□□□□ 0.42
NPHP4-202ENST00000378161 TRIM26Q12899 539 aaPredicted RBP17.6■□□□□ 0.41
NPHP4-202ENST00000378161 CCER1Q8TC90 406 aaPredicted RBP17.58■□□□□ 0.4
NPHP4-202ENST00000378161 EHMT2Q96KQ7 1210 aa17.52■□□□□ 0.4
NPHP4-202ENST00000378161 APLP2Q06481 763 aa17.49■□□□□ 0.39
NPHP4-202ENST00000378161 EIF5BO60841 1220 aaKnown RBP17.42■□□□□ 0.38
NPHP4-202ENST00000378161 DIEXFQ68CQ4 756 aaKnown RBP17.42■□□□□ 0.38
NPHP4-202ENST00000378161 CHIC1Q5VXU3 224 aa17.41■□□□□ 0.38
NPHP4-202ENST00000378161 TRIM41Q8WV44 630 aa17.36■□□□□ 0.37
NPHP4-202ENST00000378161 CSRNP3Q8WYN3 585 aa17.31■□□□□ 0.36
NPHP4-202ENST00000378161 MYT1LQ9UL68 1186 aa17.25■□□□□ 0.35
NPHP4-202ENST00000378161 NEFLP07196 543 aa17.18■□□□□ 0.34
NPHP4-202ENST00000378161 LOC105371045A0A1W2PR82 267 aa17.12■□□□□ 0.33
NPHP4-202ENST00000378161 CLSPNQ9HAW4 1339 aa17.11■□□□□ 0.33
NPHP4-202ENST00000378161 GLIPR1L2Q4G1C9 344 aa17.1■□□□□ 0.33
NPHP4-202ENST00000378161 RTL5Q5HYW3 569 aaPredicted RBP17.06■□□□□ 0.32
NPHP4-202ENST00000378161 DAXXQ9UER7 740 aaPredicted RBP16.99■□□□□ 0.31
NPHP4-202ENST00000378161 ANO8Q9HCE9 1232 aaPredicted RBP16.93■□□□□ 0.3
NPHP4-202ENST00000378161 BCANQ96GW7 911 aa16.87■□□□□ 0.29
NPHP4-202ENST00000378161 UBTFP17480 764 aaKnown RBP16.84■□□□□ 0.29
NPHP4-202ENST00000378161 PODXL2Q9NZ53 605 aa16.83■□□□□ 0.28
NPHP4-202ENST00000378161 CCDC136Q96JN2 1154 aa16.82■□□□□ 0.28
NPHP4-202ENST00000378161 ERICH6BQ5W0A0 696 aa16.81■□□□□ 0.28
NPHP4-202ENST00000378161 PKNOX2Q96KN3 472 aa16.8■□□□□ 0.28
NPHP4-202ENST00000378161 DCAF1Q9Y4B6 1507 aa16.79■□□□□ 0.28
NPHP4-202ENST00000378161 TSHZ2Q9NRE2 1034 aa16.79■□□□□ 0.28
NPHP4-202ENST00000378161 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.78■□□□□ 0.28
NPHP4-202ENST00000378161 DEKP35659 375 aaKnown RBP16.78■□□□□ 0.28
NPHP4-202ENST00000378161 ZCCHC6Q5VYS8 1495 aaKnown RBP16.77■□□□□ 0.27
NPHP4-202ENST00000378161 UBE2Q2Q8WVN8 375 aa16.76■□□□□ 0.27
NPHP4-202ENST00000378161 ZNF316A6NFI3 1004 aaPredicted RBP16.75■□□□□ 0.27
NPHP4-202ENST00000378161 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.73■□□□□ 0.27
NPHP4-202ENST00000378161 ABCC9O60706 1549 aa16.69■□□□□ 0.26
NPHP4-202ENST00000378161 CDK11AQ9UQ88 783 aaPredicted RBP16.68■□□□□ 0.26
NPHP4-202ENST00000378161 SUPT16HQ9Y5B9 1047 aaKnown RBP16.68■□□□□ 0.26
NPHP4-202ENST00000378161 RTN4Q9NQC3 1192 aaKnown RBP16.67■□□□□ 0.26
NPHP4-202ENST00000378161 RANGAP1P46060 587 aaPredicted RBP16.64■□□□□ 0.25
NPHP4-202ENST00000378161 NBR1Q14596 966 aa16.61■□□□□ 0.25
NPHP4-202ENST00000378161 SALL2Q9Y467 1007 aaPredicted RBP16.61■□□□□ 0.25
NPHP4-202ENST00000378161 RBM19Q9Y4C8 960 aaKnown RBP16.55■□□□□ 0.24
NPHP4-202ENST00000378161 FKBP8Q14318 412 aa16.54■□□□□ 0.24
NPHP4-202ENST00000378161 CCDC180Q9P1Z9 1646 aa16.53■□□□□ 0.24
NPHP4-202ENST00000378161 MIER1Q8N108 512 aa16.52■□□□□ 0.23
NPHP4-202ENST00000378161 MYO15BQ96JP2 1530 aa16.47■□□□□ 0.23
NPHP4-202ENST00000378161 PLEKHG5O94827 1062 aa16.46■□□□□ 0.23
NPHP4-202ENST00000378161 PABPN1Q86U42 306 aaKnown RBP eCLIP16.43■□□□□ 0.22
NPHP4-202ENST00000378161 HNRNPUL2Q1KMD3 747 aaKnown RBP16.42■□□□□ 0.22
NPHP4-202ENST00000378161 VSIG10Q8N0Z9 540 aa16.38■□□□□ 0.21
NPHP4-202ENST00000378161 ANP32AP39687 249 aaKnown RBP16.36■□□□□ 0.21
NPHP4-202ENST00000378161 A0A0U1RQG5 324 aaPredicted RBP16.32■□□□□ 0.2
NPHP4-202ENST00000378161 ATP1B4Q9UN42 357 aaPredicted RBP16.31■□□□□ 0.2
NPHP4-202ENST00000378161 ITGAEP38570 1179 aa16.31■□□□□ 0.2
NPHP4-202ENST00000378161 ZBTB47Q9UFB7 747 aaPredicted RBP16.25■□□□□ 0.19
NPHP4-202ENST00000378161 NOP58Q9Y2X3 529 aaKnown RBP16.23■□□□□ 0.19
NPHP4-202ENST00000378161 RSPH6AQ9H0K4 717 aa16.21■□□□□ 0.18
NPHP4-202ENST00000378161 NEFMP07197 916 aa16.2■□□□□ 0.18
NPHP4-202ENST00000378161 PDE4CQ08493 712 aa16.19■□□□□ 0.18
NPHP4-202ENST00000378161 TIMELESSQ9UNS1 1208 aa16.15■□□□□ 0.18
NPHP4-202ENST00000378161 FANCIQ9NVI1 1328 aa16.15■□□□□ 0.18
NPHP4-202ENST00000378161 SCRIBQ14160 1630 aa16.14■□□□□ 0.17
NPHP4-202ENST00000378161 IL27Q8NEV9 243 aa16.12■□□□□ 0.17
NPHP4-202ENST00000378161 RSF1Q96T23 1441 aaPredicted RBP16.08■□□□□ 0.17
NPHP4-202ENST00000378161 NAP1L5Q96NT1 182 aaPredicted RBP16.05■□□□□ 0.16
NPHP4-202ENST00000378161 HSP90AA2PQ14568 343 aaPredicted RBP16.04■□□□□ 0.16
NPHP4-202ENST00000378161 ZMYND15Q9H091 742 aa16.03■□□□□ 0.16
NPHP4-202ENST00000378161 HSP90AA1P07900 732 aaKnown RBP16.01■□□□□ 0.15
NPHP4-202ENST00000378161 NPM2Q86SE8 214 aaKnown RBP15.98■□□□□ 0.15
NPHP4-202ENST00000378161 PDIA4P13667 645 aaKnown RBP15.98■□□□□ 0.15
NPHP4-202ENST00000378161 PPM1GO15355 546 aaPredicted RBP15.96■□□□□ 0.14
NPHP4-202ENST00000378161 NCLP19338 710 aaKnown RBP15.94■□□□□ 0.14
NPHP4-202ENST00000378161 MSH5O43196 834 aa15.94■□□□□ 0.14
NPHP4-202ENST00000378161 ZNF326Q5BKZ1 582 aaKnown RBP15.91■□□□□ 0.14
NPHP4-202ENST00000378161 TNNT2P45379 298 aaPredicted RBP15.89■□□□□ 0.13
NPHP4-202ENST00000378161 FAM50AQ14320 339 aaKnown RBP15.87■□□□□ 0.13
NPHP4-202ENST00000378161 LAS1LQ9Y4W2 734 aaKnown RBP15.86■□□□□ 0.13
NPHP4-202ENST00000378161 ANP32CO43423 234 aa15.85■□□□□ 0.13
NPHP4-202ENST00000378161 RB1CC1Q8TDY2 1594 aa15.84■□□□□ 0.13
NPHP4-202ENST00000378161 TRIM52Q96A61 297 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms