RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 WDR97A6NE52 1622 aa12.43□□□□□ -0.42
COL6A3-201ENST00000295550 RSPH4AQ5TD94 716 aa12.42□□□□□ -0.42
COL6A3-201ENST00000295550 PRKRIP1Q9H875 184 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-201ENST00000295550 HFM1A2PYH4 1435 aa12.42□□□□□ -0.42
COL6A3-201ENST00000295550 A0A0U1RQG5 324 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-201ENST00000295550 RSPH6AQ9H0K4 717 aa12.42□□□□□ -0.42
COL6A3-201ENST00000295550 FANCIQ9NVI1 1328 aa12.41□□□□□ -0.42
COL6A3-201ENST00000295550 GOLGA6L3A6NEY3 463 aa12.4□□□□□ -0.42
COL6A3-201ENST00000295550 GOLGA2Q08379 1002 aa12.4□□□□□ -0.42
COL6A3-201ENST00000295550 MORC1Q86VD1 984 aa12.4□□□□□ -0.43
COL6A3-201ENST00000295550 CALRP27797 417 aaKnown RBP12.39□□□□□ -0.43
COL6A3-201ENST00000295550 CCDC7Q96M83 1385 aa12.39□□□□□ -0.43
COL6A3-201ENST00000295550 SLKQ9H2G2 1235 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-201ENST00000295550 PTPN23Q9H3S7 1636 aa12.38□□□□□ -0.43
COL6A3-201ENST00000295550 AQRO60306 1485 aaKnown RBP eCLIP12.38□□□□□ -0.43
COL6A3-201ENST00000295550 CTTNBP2Q8WZ74 1663 aa12.38□□□□□ -0.43
COL6A3-201ENST00000295550 USP35Q9P2H5 1018 aa12.38□□□□□ -0.43
COL6A3-201ENST00000295550 POGKQ9P215 609 aa12.38□□□□□ -0.43
COL6A3-201ENST00000295550 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.38□□□□□ -0.43
COL6A3-201ENST00000295550 TOPBP1Q92547 1522 aa12.37□□□□□ -0.43
COL6A3-201ENST00000295550 CFAP43Q8NDM7 1665 aa12.36□□□□□ -0.43
COL6A3-201ENST00000295550 CFAP44Q96MT7 982 aa12.36□□□□□ -0.43
COL6A3-201ENST00000295550 NPHP1O15259 732 aa12.36□□□□□ -0.43
COL6A3-201ENST00000295550 MIA2Q96PC5 1412 aa12.36□□□□□ -0.43
COL6A3-201ENST00000295550 KIAA1211Q6ZU35 1233 aa12.36□□□□□ -0.43
COL6A3-201ENST00000295550 TPM4P67936 248 aa12.35□□□□□ -0.43
COL6A3-201ENST00000295550 PHF14O94880 888 aa12.35□□□□□ -0.43
COL6A3-201ENST00000295550 EFCAB2Q5VUJ9 269 aa12.33□□□□□ -0.44
COL6A3-201ENST00000295550 POLA1P09884 1462 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-201ENST00000295550 U2SURPO15042 1029 aaKnown RBP12.33□□□□□ -0.44
COL6A3-201ENST00000295550 HTATSF1O43719 755 aaKnown RBP12.33□□□□□ -0.44
COL6A3-201ENST00000295550 GRIN2BQ13224 1484 aa12.33□□□□□ -0.44
COL6A3-201ENST00000295550 RRP1P56182 461 aaKnown RBP12.33□□□□□ -0.44
COL6A3-201ENST00000295550 KIF7Q2M1P5 1343 aa12.32□□□□□ -0.44
COL6A3-201ENST00000295550 RWDD1Q9H446 243 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-201ENST00000295550 ABCA10Q8WWZ4 1543 aa12.32□□□□□ -0.44
COL6A3-201ENST00000295550 IQGAP2Q13576 1575 aa12.32□□□□□ -0.44
COL6A3-201ENST00000295550 VSIG10Q8N0Z9 540 aa12.32□□□□□ -0.44
COL6A3-201ENST00000295550 IPO8O15397 1037 aaKnown RBP12.31□□□□□ -0.44
COL6A3-201ENST00000295550 HAP1P54257 671 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-201ENST00000295550 ST20-MTHFSA0A0A6YYL1 179 aa12.31□□□□□ -0.44
COL6A3-201ENST00000295550 PMFBP1Q8TBY8 1022 aa12.3□□□□□ -0.44
COL6A3-201ENST00000295550 ISY1Q9ULR0 285 aaKnown RBP12.3□□□□□ -0.44
COL6A3-201ENST00000295550 HNRNPMP52272 730 aaKnown RBP eCLIP12.3□□□□□ -0.44
COL6A3-201ENST00000295550 THOC2Q8NI27 1593 aaKnown RBP12.3□□□□□ -0.44
COL6A3-201ENST00000295550 CALD1Q05682 793 aaKnown RBP12.3□□□□□ -0.44
COL6A3-201ENST00000295550 PDE4CQ08493 712 aa12.3□□□□□ -0.44
COL6A3-201ENST00000295550 PRM3Q9NNZ6 103 aa12.29□□□□□ -0.44
COL6A3-201ENST00000295550 CENPQQ7L2Z9 268 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-201ENST00000295550 CENPJQ9HC77 1338 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-201ENST00000295550 ZNF771Q7L3S4 317 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-201ENST00000295550 WASHC2AQ641Q2 1341 aa12.29□□□□□ -0.44
COL6A3-201ENST00000295550 ANKRD50Q9ULJ7 1429 aa12.28□□□□□ -0.44
COL6A3-201ENST00000295550 BRD4O60885 1362 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-201ENST00000295550 SRPK2P78362 688 aaKnown RBP12.28□□□□□ -0.44
COL6A3-201ENST00000295550 KIF21AQ7Z4S6 1674 aa12.28□□□□□ -0.44
COL6A3-201ENST00000295550 CSPP1Q1MSJ5 1256 aa12.27□□□□□ -0.45
COL6A3-201ENST00000295550 SPAG9O60271 1321 aaKnown RBP12.27□□□□□ -0.45
COL6A3-201ENST00000295550 MRC2Q9UBG0 1479 aa12.27□□□□□ -0.45
COL6A3-201ENST00000295550 TPM3P06753 285 aa12.26□□□□□ -0.45
COL6A3-201ENST00000295550 HDGFL2Q7Z4V5 671 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-201ENST00000295550 LAMC3Q9Y6N6 1575 aa12.26□□□□□ -0.45
COL6A3-201ENST00000295550 APBB1O00213 710 aa12.26□□□□□ -0.45
COL6A3-201ENST00000295550 CCDC34Q96HJ3 373 aa12.25□□□□□ -0.45
COL6A3-201ENST00000295550 ITPRIPQ8IWB1 547 aa12.25□□□□□ -0.45
COL6A3-201ENST00000295550 DDX11L8A8MPP1 907 aa12.25□□□□□ -0.45
COL6A3-201ENST00000295550 PANK3Q9H999 370 aa12.25□□□□□ -0.45
COL6A3-201ENST00000295550 PTPRGP23470 1445 aa12.25□□□□□ -0.45
COL6A3-201ENST00000295550 DAPK1P53355 1430 aa12.25□□□□□ -0.45
COL6A3-201ENST00000295550 NESP48681 1621 aa12.25□□□□□ -0.45
COL6A3-201ENST00000295550 PATL2C9JE40 543 aaKnown RBP12.25□□□□□ -0.45
COL6A3-201ENST00000295550 EPRSP07814 1512 aaKnown RBP12.24□□□□□ -0.45
COL6A3-201ENST00000295550 HSP90B1P14625 803 aaKnown RBP12.24□□□□□ -0.45
COL6A3-201ENST00000295550 ARHGAP5Q13017 1502 aa12.24□□□□□ -0.45
COL6A3-201ENST00000295550 ITSN2Q9NZM3 1697 aa12.24□□□□□ -0.45
COL6A3-201ENST00000295550 U2AF1L5P0DN76 240 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-201ENST00000295550 U2AF1Q01081 240 aaKnown RBP eCLIP12.24□□□□□ -0.45
COL6A3-201ENST00000295550 PDE4AP27815 886 aa12.23□□□□□ -0.45
COL6A3-201ENST00000295550 IFT140Q96RY7 1462 aa12.23□□□□□ -0.45
COL6A3-201ENST00000295550 JPH4Q96JJ6 628 aa12.23□□□□□ -0.45
COL6A3-201ENST00000295550 FAM161AQ3B820 660 aa12.23□□□□□ -0.45
COL6A3-201ENST00000295550 KIAA1107Q9UPP5 1409 aa12.23□□□□□ -0.45
COL6A3-201ENST00000295550 MFAP1P55081 439 aaKnown RBP12.23□□□□□ -0.45
COL6A3-201ENST00000295550 ROCK1Q13464 1354 aa12.22□□□□□ -0.45
COL6A3-201ENST00000295550 C9orf84Q5VXU9 1444 aa12.22□□□□□ -0.45
COL6A3-201ENST00000295550 E9PSI1 815 aa12.22□□□□□ -0.45
COL6A3-201ENST00000295550 GPATCH3Q96I76 525 aa12.22□□□□□ -0.45
COL6A3-201ENST00000295550 NGEFQ8N5V2 710 aa12.22□□□□□ -0.45
COL6A3-201ENST00000295550 KIF14Q15058 1648 aa12.22□□□□□ -0.45
COL6A3-201ENST00000295550 CCAR2Q8N163 923 aaKnown RBP12.22□□□□□ -0.45
COL6A3-201ENST00000295550 NAIPQ13075 1403 aa12.22□□□□□ -0.45
COL6A3-201ENST00000295550 SYNJ2O15056 1496 aa12.22□□□□□ -0.45
COL6A3-201ENST00000295550 CCDC146Q8IYE0 955 aa12.21□□□□□ -0.45
COL6A3-201ENST00000295550 CGNL1Q0VF96 1302 aa12.21□□□□□ -0.45
COL6A3-201ENST00000295550 TERF2IPQ9NYB0 399 aa12.21□□□□□ -0.45
COL6A3-201ENST00000295550 EXOC6Q8TAG9 804 aa12.21□□□□□ -0.46
COL6A3-201ENST00000295550 GPS2Q13227 327 aa12.2□□□□□ -0.46
COL6A3-201ENST00000295550 CREBRFQ8IUR6 639 aa12.2□□□□□ -0.46
COL6A3-201ENST00000295550 SMG6Q86US8 1419 aaKnown RBP12.2□□□□□ -0.46
COL6A3-201ENST00000295550 HDGFP51858 240 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms