RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 NISCHQ9Y2I1 1504 aa17.35■□□□□ 0.37
COL6A3-201ENST00000295550 DCAF8L2P0C7V8 631 aa16.26■□□□□ 0.19
COL6A3-201ENST00000295550 PELP1Q8IZL8 1130 aaKnown RBP16.1■□□□□ 0.17
COL6A3-201ENST00000295550 SUPT5HO00267 1087 aaKnown RBP15.97■□□□□ 0.15
COL6A3-201ENST00000295550 SHROOM4Q9ULL8 1493 aa15.91■□□□□ 0.14
COL6A3-201ENST00000295550 ERICH6Q7L0X2 663 aa15.42■□□□□ 0.06
COL6A3-201ENST00000295550 MYT1Q01538 1121 aa15.37■□□□□ 0.05
COL6A3-201ENST00000295550 CCER1Q8TC90 406 aaPredicted RBP15.28■□□□□ 0.04
COL6A3-201ENST00000295550 EHMT2Q96KQ7 1210 aa15.23■□□□□ 0.03
COL6A3-201ENST00000295550 CENPBP07199 599 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-201ENST00000295550 PCGF6Q9BYE7 350 aa15.16■□□□□ 0.02
COL6A3-201ENST00000295550 APLP2Q06481 763 aa15.08■□□□□ 0
COL6A3-201ENST00000295550 ZEB1P37275 1124 aaPredicted RBP15.05■□□□□ -0
COL6A3-201ENST00000295550 TRIM41Q8WV44 630 aa14.92□□□□□ -0.02
COL6A3-201ENST00000295550 FAM9AQ8IZU1 332 aaPredicted RBP14.91□□□□□ -0.02
COL6A3-201ENST00000295550 NEFLP07196 543 aa14.91□□□□□ -0.02
COL6A3-201ENST00000295550 TTBK1Q5TCY1 1321 aaPredicted RBP14.86□□□□□ -0.03
COL6A3-201ENST00000295550 YTHDC1Q96MU7 727 aaKnown RBP14.77□□□□□ -0.05
COL6A3-201ENST00000295550 HRCP23327 699 aa14.76□□□□□ -0.05
COL6A3-201ENST00000295550 CCDC180Q9P1Z9 1646 aa14.73□□□□□ -0.05
COL6A3-201ENST00000295550 TRIM26Q12899 539 aaPredicted RBP14.72□□□□□ -0.05
COL6A3-201ENST00000295550 CHIC1Q5VXU3 224 aa14.7□□□□□ -0.06
COL6A3-201ENST00000295550 DAXXQ9UER7 740 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-201ENST00000295550 ZCCHC6Q5VYS8 1495 aaKnown RBP14.55□□□□□ -0.08
COL6A3-201ENST00000295550 UBTFP17480 764 aaKnown RBP14.54□□□□□ -0.08
COL6A3-201ENST00000295550 RANGAP1P46060 587 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-201ENST00000295550 LOC105371045A0A1W2PR82 267 aa14.43□□□□□ -0.1
COL6A3-201ENST00000295550 RTL5Q5HYW3 569 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-201ENST00000295550 ATP1B4Q9UN42 357 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-201ENST00000295550 PPARGC1BQ86YN6 1023 aaKnown RBP14.32□□□□□ -0.12
COL6A3-201ENST00000295550 ZNF316A6NFI3 1004 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-201ENST00000295550 DCAF1Q9Y4B6 1507 aa14.29□□□□□ -0.12
COL6A3-201ENST00000295550 SCRIBQ14160 1630 aa14.26□□□□□ -0.13
COL6A3-201ENST00000295550 ABCC9O60706 1549 aa14.17□□□□□ -0.14
COL6A3-201ENST00000295550 POLR3GLQ9BT43 218 aa14.11□□□□□ -0.15
COL6A3-201ENST00000295550 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-201ENST00000295550 DIEXFQ68CQ4 756 aaKnown RBP14.09□□□□□ -0.15
COL6A3-201ENST00000295550 CLSPNQ9HAW4 1339 aa14.08□□□□□ -0.15
COL6A3-201ENST00000295550 HNRNPUL2Q1KMD3 747 aaKnown RBP14.05□□□□□ -0.16
COL6A3-201ENST00000295550 MYO15BQ96JP2 1530 aa14□□□□□ -0.17
COL6A3-201ENST00000295550 CNGB1Q14028 1251 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-201ENST00000295550 ITGAEP38570 1179 aa13.93□□□□□ -0.18
COL6A3-201ENST00000295550 NACADO15069 1562 aa13.85□□□□□ -0.19
COL6A3-201ENST00000295550 BCANQ96GW7 911 aa13.85□□□□□ -0.19
COL6A3-201ENST00000295550 RB1CC1Q8TDY2 1594 aa13.85□□□□□ -0.19
COL6A3-201ENST00000295550 SLC4A1APQ9BWU0 796 aaKnown RBP13.83□□□□□ -0.2
COL6A3-201ENST00000295550 CDK11AQ9UQ88 783 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-201ENST00000295550 GTF3C3Q9Y5Q9 886 aa13.81□□□□□ -0.2
COL6A3-201ENST00000295550 EIF5BO60841 1220 aaKnown RBP13.8□□□□□ -0.2
COL6A3-201ENST00000295550 PABPN1Q86U42 306 aaKnown RBP eCLIP13.79□□□□□ -0.2
COL6A3-201ENST00000295550 GLIPR1L2Q4G1C9 344 aa13.78□□□□□ -0.2
COL6A3-201ENST00000295550 ACIN1Q9UKV3 1341 aaKnown RBP13.78□□□□□ -0.2
COL6A3-201ENST00000295550 RSF1Q96T23 1441 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-201ENST00000295550 CSRNP3Q8WYN3 585 aa13.77□□□□□ -0.2
COL6A3-201ENST00000295550 MYT1LQ9UL68 1186 aa13.76□□□□□ -0.21
COL6A3-201ENST00000295550 FAM50AQ14320 339 aaKnown RBP13.73□□□□□ -0.21
COL6A3-201ENST00000295550 ANP32AP39687 249 aaKnown RBP13.72□□□□□ -0.21
COL6A3-201ENST00000295550 ZBTB47Q9UFB7 747 aaPredicted RBP13.71□□□□□ -0.22
COL6A3-201ENST00000295550 EEA1Q15075 1411 aa13.7□□□□□ -0.22
COL6A3-201ENST00000295550 BAZ1AQ9NRL2 1556 aaPredicted RBP13.65□□□□□ -0.22
COL6A3-201ENST00000295550 ANP32BQ92688 251 aaKnown RBP13.65□□□□□ -0.22
COL6A3-201ENST00000295550 GOLGA3Q08378 1498 aa13.63□□□□□ -0.23
COL6A3-201ENST00000295550 CANXP27824 592 aaKnown RBP13.63□□□□□ -0.23
COL6A3-201ENST00000295550 ANP32CO43423 234 aa13.62□□□□□ -0.23
COL6A3-201ENST00000295550 CEP162Q5TB80 1403 aa13.61□□□□□ -0.23
COL6A3-201ENST00000295550 NEUROD1Q13562 356 aa13.6□□□□□ -0.23
COL6A3-201ENST00000295550 CLIP1P30622 1438 aa13.6□□□□□ -0.23
COL6A3-201ENST00000295550 BCL11AQ9H165 835 aa13.57□□□□□ -0.24
COL6A3-201ENST00000295550 NPM2Q86SE8 214 aaKnown RBP13.56□□□□□ -0.24
COL6A3-201ENST00000295550 TRIM52Q96A61 297 aa13.53□□□□□ -0.24
COL6A3-201ENST00000295550 CEP164Q9UPV0 1460 aa13.51□□□□□ -0.25
COL6A3-201ENST00000295550 HSP90AA1P07900 732 aaKnown RBP13.49□□□□□ -0.25
COL6A3-201ENST00000295550 TNIKQ9UKE5 1360 aa13.49□□□□□ -0.25
COL6A3-201ENST00000295550 WRNQ14191 1432 aaPredicted RBP eCLIP13.48□□□□□ -0.25
COL6A3-201ENST00000295550 SCAF1Q9H7N4 1312 aaKnown RBP13.47□□□□□ -0.25
COL6A3-201ENST00000295550 BAZ1BQ9UIG0 1483 aaKnown RBP13.47□□□□□ -0.25
COL6A3-201ENST00000295550 ZNF326Q5BKZ1 582 aaKnown RBP13.44□□□□□ -0.26
COL6A3-201ENST00000295550 TONSLQ96HA7 1378 aa13.43□□□□□ -0.26
COL6A3-201ENST00000295550 NBR1Q14596 966 aa13.43□□□□□ -0.26
COL6A3-201ENST00000295550 WIZO95785 1651 aa13.41□□□□□ -0.26
COL6A3-201ENST00000295550 CECR2Q9BXF3 1484 aa13.4□□□□□ -0.26
COL6A3-201ENST00000295550 SLC24A1O60721 1099 aa13.4□□□□□ -0.26
COL6A3-201ENST00000295550 TOP2AP11388 1531 aaKnown RBP13.4□□□□□ -0.26
COL6A3-201ENST00000295550 MROH2BQ7Z745 1585 aa13.39□□□□□ -0.27
COL6A3-201ENST00000295550 UPF2Q9HAU5 1272 aaKnown RBP13.37□□□□□ -0.27
COL6A3-201ENST00000295550 ARXQ96QS3 562 aa13.36□□□□□ -0.27
COL6A3-201ENST00000295550 ABCC8Q09428 1581 aa13.35□□□□□ -0.27
COL6A3-201ENST00000295550 P3H3Q8IVL6 736 aa13.35□□□□□ -0.27
COL6A3-201ENST00000295550 NEFMP07197 916 aa13.33□□□□□ -0.28
COL6A3-201ENST00000295550 KIF27Q86VH2 1401 aa13.33□□□□□ -0.28
COL6A3-201ENST00000295550 MIER1Q8N108 512 aa13.3□□□□□ -0.28
COL6A3-201ENST00000295550 FKBP8Q14318 412 aa13.3□□□□□ -0.28
COL6A3-201ENST00000295550 SMARCA2P51531 1590 aa13.29□□□□□ -0.28
COL6A3-201ENST00000295550 CCDC88BA6NC98 1476 aa13.29□□□□□ -0.28
COL6A3-201ENST00000295550 SMARCA4P51532 1647 aa13.28□□□□□ -0.28
COL6A3-201ENST00000295550 TNNT2P45379 298 aaPredicted RBP13.27□□□□□ -0.28
COL6A3-201ENST00000295550 MTUS2Q5JR59 1369 aa13.25□□□□□ -0.29
COL6A3-201ENST00000295550 SOGA1O94964 1423 aa13.25□□□□□ -0.29
COL6A3-201ENST00000295550 VPS8Q8N3P4 1428 aa13.24□□□□□ -0.29
COL6A3-201ENST00000295550 DDX10Q13206 875 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms