RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 YJR011CP47086 261 aaPredicted RBP-2.59□□□□□ -2.82
snR40snR40 YGR021WP53212 290 aa-2.59□□□□□ -2.82
snR40snR40 RPA49Q01080 415 aaPredicted RBP-2.59□□□□□ -2.82
snR40snR40 TAF12Q03761 539 aa-2.59□□□□□ -2.82
snR40snR40 PFK27Q12471 397 aaPredicted RBP-2.59□□□□□ -2.82
snR40snR40 VPS63O13549 108 aa-2.6□□□□□ -2.83
snR40snR40 DDI2P0CH63 225 aa-2.6□□□□□ -2.83
snR40snR40 DDI3P0CH64 225 aa-2.6□□□□□ -2.83
snR40snR40 HXT2P23585 541 aa-2.6□□□□□ -2.83
snR40snR40 AUR1P36107 401 aaPredicted RBP-2.6□□□□□ -2.83
snR40snR40 SRP72P38688 640 aaKnown RBP-2.6□□□□□ -2.83
snR40snR40 BIG1P38813 335 aa-2.6□□□□□ -2.83
snR40snR40 PSF2P40359 213 aa-2.6□□□□□ -2.83
snR40snR40 EFM4P40516 257 aa-2.6□□□□□ -2.83
snR40snR40 CYT2Q00873 224 aa-2.6□□□□□ -2.83
snR40snR40 YMR010WQ03687 405 aa-2.6□□□□□ -2.83
snR40snR40 YLL007CQ07799 665 aa-2.6□□□□□ -2.83
snR40snR40 YPL162CQ12042 273 aa-2.6□□□□□ -2.83
snR40snR40 SNF2P22082 1703 aa-2.6□□□□□ -2.83
snR40snR40 YHR139C-AO13536 103 aa-2.61□□□□□ -2.83
snR40snR40 PAB1P04147 577 aaKnown RBP RIP-Chip data-2.61□□□□□ -2.83not detected
snR40snR40 ERG3P32353 365 aa-2.61□□□□□ -2.83
snR40snR40 YSC83P32792 385 aa-2.61□□□□□ -2.83
snR40snR40 RFC3P38629 340 aa-2.61□□□□□ -2.83
snR40snR40 YHL044WP38727 235 aa-2.61□□□□□ -2.83
snR40snR40 SMF2P38778 549 aa-2.61□□□□□ -2.83
snR40snR40 ARC1P46672 376 aaKnown RBP-2.61□□□□□ -2.83
snR40snR40 EFM3P47163 339 aa-2.61□□□□□ -2.83
snR40snR40 NOP7P53261 605 aaKnown RBP-2.61□□□□□ -2.83
snR40snR40 CWC22P53333 577 aaKnown RBP-2.61□□□□□ -2.83
snR40snR40 YDR131CQ03899 556 aa-2.61□□□□□ -2.83
snR40snR40 GYL1Q04322 720 aa-2.61□□□□□ -2.83
snR40snR40 VIK1Q12045 647 aa-2.61□□□□□ -2.83
snR40snR40 SFI1Q12369 946 aa-2.61□□□□□ -2.83
snR40snR40 SPE4Q12455 300 aa-2.61□□□□□ -2.83
snR40snR40 REP1P03871 373 aa-2.62□□□□□ -2.83
snR40snR40 VPS1P21576 704 aaKnown RBP-2.62□□□□□ -2.83
snR40snR40 SCM4P32564 187 aa-2.62□□□□□ -2.83
snR40snR40 RFT1P38206 574 aaPredicted RBP-2.62□□□□□ -2.83
snR40snR40 YBR071WP38243 211 aa-2.62□□□□□ -2.83
snR40snR40 FMP48P53233 369 aa-2.62□□□□□ -2.83
snR40snR40 YGR266WP53326 701 aa-2.62□□□□□ -2.83
snR40snR40 YML037CQ03703 340 aa-2.62□□□□□ -2.83
snR40snR40 FIN1Q03898 291 aa-2.62□□□□□ -2.83
snR40snR40 FCF1Q05498 189 aaPredicted RBP-2.62□□□□□ -2.83
snR40snR40 YDL109CQ12103 647 aa-2.62□□□□□ -2.83
snR40snR40 HFA1P32874 2273 aa-2.63□□□□□ -2.83
snR40snR40 RPL23AP0CX41 137 aaKnown RBP-2.63□□□□□ -2.83
snR40snR40 RPL23BP0CX42 137 aaKnown RBP-2.63□□□□□ -2.83
snR40snR40 PEX4P29340 183 aa-2.63□□□□□ -2.83
snR40snR40 GPX2P38143 162 aa-2.63□□□□□ -2.83
snR40snR40 ENP1P38333 483 aaKnown RBP-2.63□□□□□ -2.83
snR40snR40 YHR022CP38763 256 aa-2.63□□□□□ -2.83
snR40snR40 PES4P39684 611 aa-2.63□□□□□ -2.83
snR40snR40 YFR018CP43599 363 aa-2.63□□□□□ -2.83
snR40snR40 YJR079WP47126 109 aa-2.63□□□□□ -2.83
snR40snR40 MPS2P53159 387 aa-2.63□□□□□ -2.83
snR40snR40 YGR117CP53270 476 aa-2.63□□□□□ -2.83
snR40snR40 TRM112P53738 135 aaPredicted RBP-2.63□□□□□ -2.83
snR40snR40 ATG34Q12292 412 aa-2.63□□□□□ -2.83
snR40snR40 ERP3Q12403 225 aa-2.63□□□□□ -2.83
snR40snR40 MTF2P10849 440 aa-2.64□□□□□ -2.83
snR40snR40 VMA2P16140 517 aaKnown RBP-2.64□□□□□ -2.83
snR40snR40 IDH2P28241 369 aaKnown RBP-2.64□□□□□ -2.83
snR40snR40 APE3P37302 537 aaKnown RBP-2.64□□□□□ -2.83
snR40snR40 RPS14BP39516 138 aaKnown RBP-2.64□□□□□ -2.83
snR40snR40 ERG25P53045 309 aa-2.64□□□□□ -2.83
snR40snR40 OSH6Q02201 448 aa-2.64□□□□□ -2.83
snR40snR40 APC5Q08683 685 aa-2.64□□□□□ -2.83
snR40snR40 YDL007C-AQ2V2Q0 85 aa-2.64□□□□□ -2.83
snR40snR40 SAS5Q99314 248 aa-2.64□□□□□ -2.83
snR40snR40 MYO1P08964 1928 aa-2.65□□□□□ -2.83
snR40snR40 RPL16AP26784 199 aaKnown RBP-2.65□□□□□ -2.83
snR40snR40 MDL1P33310 695 aa-2.65□□□□□ -2.83
snR40snR40 TEF4P36008 412 aaKnown RBP-2.65□□□□□ -2.83
snR40snR40 HIT1P46973 164 aa-2.65□□□□□ -2.83
snR40snR40 YGR149WP48236 432 aa-2.65□□□□□ -2.83
snR40snR40 TAP42Q04372 366 aa-2.65□□□□□ -2.83
snR40snR40 ERB1Q04660 807 aaKnown RBP-2.65□□□□□ -2.83
snR40snR40 TRM10Q12400 293 aa-2.65□□□□□ -2.83
snR40snR40 YLR307C-AQ3E825 87 aa-2.65□□□□□ -2.83
snR40snR40 FAS2P19097 1887 aaKnown RBP-2.66□□□□□ -2.84
snR40snR40 ALG1P16661 449 aa-2.66□□□□□ -2.84
snR40snR40 UBC1P21734 215 aaKnown RBP-2.66□□□□□ -2.84
snR40snR40 MPE1P35728 441 aaKnown RBP-2.66□□□□□ -2.84
snR40snR40 EDC2P40023 145 aaPredicted RBP-2.66□□□□□ -2.84
snR40snR40 TIF34P40217 347 aaKnown RBP-2.66□□□□□ -2.84
snR40snR40 SNX4P47057 423 aa-2.66□□□□□ -2.84
snR40snR40 RSM27P53305 110 aa-2.66□□□□□ -2.84
snR40snR40 PRM15Q03262 622 aa-2.66□□□□□ -2.84
snR40snR40 URH1Q04179 340 aa-2.66□□□□□ -2.84
snR40snR40 GLE1Q12315 538 aa-2.66□□□□□ -2.84
snR40snR40 KAR3P17119 729 aa-2.67□□□□□ -2.84
snR40snR40 CNS1P33313 385 aa-2.67□□□□□ -2.84
snR40snR40 TIR2P33890 251 aa-2.67□□□□□ -2.84
snR40snR40 PRX1P34227 261 aaKnown RBP-2.67□□□□□ -2.84
snR40snR40 YBL029WP38201 376 aa-2.67□□□□□ -2.84
snR40snR40 NNF1P47149 201 aa-2.67□□□□□ -2.84
snR40snR40 RRT6P53117 311 aaPredicted RBP-2.67□□□□□ -2.84
snR40snR40 MRPL19P53875 158 aa-2.67□□□□□ -2.84
Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms