RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	KDX1	P36005	433 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	NAT2	P37293	288 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	PCH2	P38126	564 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	SHE3	P38272	425 aa	Known RBP	4.29	□□□□□ -1.72
CAF16	YFL028C	SMC2	P38989	1170 aa	Known RBP	4.29	□□□□□ -1.72
CAF16	YFL028C	YEL075C	P39972	122 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	DSE1	P40077	573 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	PCL7	P40186	285 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	YJL070C	P40361	888 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	SIM1	P40472	476 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	ASG7	P46993	209 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	WSC2	P53832	503 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	ABZ2	Q03266	374 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	PRP3	Q03338	469 aa	Predicted RBP	4.29	□□□□□ -1.72
CAF16	YFL028C	YMR310C	Q04867	317 aa	Predicted RBP	4.29	□□□□□ -1.72
CAF16	YFL028C	LDS2	Q08218	356 aa		4.29	□□□□□ -1.72
CAF16	YFL028C	RRP12	Q12754	1228 aa	Known RBP	4.29	□□□□□ -1.72
CAF16	YFL028C	CPR1	P14832	162 aa	Known RBP	4.28	□□□□□ -1.72
CAF16	YFL028C	MRP4	P32902	394 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	TKL2	P33315	681 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	YDR089W	P38966	869 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	FAA2	P39518	744 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	MND1	P53102	219 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	SPR6	Q01684	191 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	ARO80	Q04052	950 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	PRM6	Q04705	352 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	YDR222W	Q04925	415 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	TSR1	Q07381	788 aa	Known RBP	4.28	□□□□□ -1.72
CAF16	YFL028C	GPM2	Q12008	311 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	THP3	Q12049	470 aa	Known RBP	4.28	□□□□□ -1.72
CAF16	YFL028C	TPT1	Q12272	230 aa	Known RBP	4.28	□□□□□ -1.72
CAF16	YFL028C	HRT3	Q12347	344 aa		4.28	□□□□□ -1.72
CAF16	YFL028C	MCK1	P21965	375 aa	Known RBP	4.27	□□□□□ -1.73
CAF16	YFL028C	RNA14	P25298	677 aa	Known RBP	4.27	□□□□□ -1.73
CAF16	YFL028C	MSK1	P32048	576 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	EBP2	P36049	427 aa	Known RBP	4.27	□□□□□ -1.73
CAF16	YFL028C	YJL213W	P40896	331 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	SFH5	P47008	294 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	LSC1	P53598	329 aa	Known RBP	4.27	□□□□□ -1.73
CAF16	YFL028C	YMR181C	Q03231	154 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	CCE1	Q03702	353 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	BCH1	Q05029	724 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	GRS2	Q06817	618 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	TAF10	Q12030	206 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	GLE1	Q12315	538 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	BI3	Q9ZZW7	517 aa		4.27	□□□□□ -1.73
CAF16	YFL028C	JIP3	O13555	125 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	RNA1	P11745	407 aa	Known RBP	4.26	□□□□□ -1.73
CAF16	YFL028C	DBR1	P24309	405 aa	Known RBP	4.26	□□□□□ -1.73
CAF16	YFL028C	YCL068C	P25593	260 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	HMX1	P32339	317 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	HXT1	P32465	570 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	SKT5	P34226	696 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	CHK1	P38147	527 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	MIX23	P38162	196 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	YBR137W	P38276	179 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	YHR131C	P38835	850 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	MDM31	P38880	579 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	SEC9	P40357	651 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	HOP2	P53187	214 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	IBD2	P53892	351 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	ALF1	P53904	254 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	HXT11	P54862	567 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	HER2	Q03557	464 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	VTI1	Q04338	217 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	ARR1	Q06596	294 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	DDC1	Q08949	612 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	DAS2	Q12084	232 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	EMP46	Q12396	444 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	CCH1	P50077	2039 aa		4.26	□□□□□ -1.73
CAF16	YFL028C	RPC40	P07703	335 aa	Known RBP	4.25	□□□□□ -1.73
CAF16	YFL028C	HXT2	P23585	541 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	AGA1	P32323	725 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	TCD1	P38756	429 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	MTC6	P38849	526 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	LIN1	P38852	340 aa	Predicted RBP	4.25	□□□□□ -1.73
CAF16	YFL028C	FHL1	P39521	936 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	YER189W	P40104	122 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	YFL067W	P43537	175 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	COS10	P52924	374 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	CRZ1	P53968	678 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	YDR278C	Q05612	105 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	YOP1	Q12402	180 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	FSH3	Q99369	266 aa		4.25	□□□□□ -1.73
CAF16	YFL028C	GDH1	P07262	454 aa	Known RBP	4.24	□□□□□ -1.73
CAF16	YFL028C	CAP2	P13517	287 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	PUT4	P15380	627 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	EXG1	P23776	448 aa	Known RBP	4.24	□□□□□ -1.73
CAF16	YFL028C	SPS22	P25380	463 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	YBP1	P38315	674 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	TIF5	P38431	405 aa	Known RBP	4.24	□□□□□ -1.73
CAF16	YFL028C	HIS2	P38635	335 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	ALP1	P38971	573 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	AVT2	P39981	480 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	MOB1	P40484	314 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	LYS12	P40495	371 aa	Known RBP	4.24	□□□□□ -1.73
CAF16	YFL028C	SNZ3	P43545	298 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	NCA3	P46955	337 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	SNZ2	P53824	298 aa		4.24	□□□□□ -1.73
CAF16	YFL028C	ERV41	Q04651	352 aa		4.24	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 40.9 ms