RNA–Protein interactions for RNA: YJL176C

SWI3, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SWI3, Length 2,478 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI3	YJL176C	SWA2	Q06677	668 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	BRX1	Q08235	291 aa	Known RBP	4.23	□□□□□ -1.73
SWI3	YJL176C	RRG7	Q08774	242 aa	Predicted RBP	4.23	□□□□□ -1.73
SWI3	YJL176C	MTR10	Q99189	972 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	YFR010W-A	P0C5N0	62 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	YAK1	P14680	807 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	RAD51	P25454	400 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	ITR2	P30606	609 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	YHR219W	P38900	624 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	VHR1	P40522	640 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	AGP3	P43548	558 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	CAK1	P43568	368 aa	Predicted RBP	4.23	□□□□□ -1.73
SWI3	YJL176C	PGU1	P47180	361 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	YGR168C	P53293	376 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	FDC1	Q03034	503 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	MIX14	Q04341	121 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	YDL218W	Q07629	317 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	RDR1	Q08904	546 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	IRA1	P18963	3092 aa		4.23	□□□□□ -1.73
SWI3	YJL176C	YHR214C-D	P0CX93	97 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	FBA1	P14540	359 aa	Known RBP	4.22	□□□□□ -1.73
SWI3	YJL176C	HBS1	P32769	611 aa	Known RBP	4.22	□□□□□ -1.73
SWI3	YJL176C	YKR073C	P36153	106 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	APE4	P38821	490 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	TAT2	P38967	592 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	YEL057C	P39983	233 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	THO1	P40040	218 aa	Known RBP	4.22	□□□□□ -1.73
SWI3	YJL176C	YNL195C	P40168	261 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	VNX1	P42839	908 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	GCN20	P43535	752 aa	Known RBP	4.22	□□□□□ -1.73
SWI3	YJL176C	UBX6	P47049	396 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	IMD4	P50094	524 aa	Known RBP	4.22	□□□□□ -1.73
SWI3	YJL176C	MRK1	P50873	501 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	NOP12	Q08208	459 aa	Known RBP	4.22	□□□□□ -1.73
SWI3	YJL176C	ENB1	Q08299	606 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	HNT3	Q08702	217 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	YRM1	Q12340	786 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	SNF4	P12904	322 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	ERD2	P18414	219 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	PUP2	P32379	260 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	HIR2	P32480	875 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	MDJ2	P42834	146 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	FAR7	P43592	221 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	MEP3	P53390	489 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	EKI1	Q03764	534 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	YDR239C	Q03780	787 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	GIS1	Q03833	894 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	RSA1	Q08932	381 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	MCP1	Q12106	302 aa		4.22	□□□□□ -1.73
SWI3	YJL176C	AST1	P35183	429 aa		4.21	□□□□□ -1.73
SWI3	YJL176C	MTC4	P38335	694 aa	Known RBP	4.21	□□□□□ -1.73
SWI3	YJL176C	YAR028W	P39548	234 aa		4.21	□□□□□ -1.73
SWI3	YJL176C	YER010C	P40011	234 aa		4.21	□□□□□ -1.73
SWI3	YJL176C	BPL1	P48445	690 aa	Predicted RBP	4.21	□□□□□ -1.73
SWI3	YJL176C	ASI2	P53895	289 aa		4.21	□□□□□ -1.73
SWI3	YJL176C	YSA1	Q01976	231 aa		4.21	□□□□□ -1.73
SWI3	YJL176C	YKR011C	Q02209	353 aa		4.21	□□□□□ -1.73
SWI3	YJL176C	SYO1	Q07395	620 aa		4.21	□□□□□ -1.73
SWI3	YJL176C	DTD1	Q07648	150 aa	Known RBP	4.21	□□□□□ -1.73
SWI3	YJL176C	AVO1	Q08236	1176 aa		4.21	□□□□□ -1.73
SWI3	YJL176C	DFG16	Q99234	619 aa		4.21	□□□□□ -1.73
SWI3	YJL176C	DET1	Q99288	334 aa	Known RBP	4.21	□□□□□ -1.73
SWI3	YJL176C	PHO2	P07269	559 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	RRP7	P25368	297 aa	Predicted RBP	4.21	□□□□□ -1.74
SWI3	YJL176C	UBC8	P28263	218 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	ARC19	P33204	171 aa	Known RBP	4.21	□□□□□ -1.74
SWI3	YJL176C	HIS7	P33734	552 aa	Known RBP	4.21	□□□□□ -1.74
SWI3	YJL176C	MDJ1	P35191	511 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	ECM15	P35195	104 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	APD1	P38281	316 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	PEX18	P38855	283 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	YEL068C	P39977	110 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	YNL208W	P40159	199 aa	Known RBP	4.21	□□□□□ -1.74
SWI3	YJL176C	REE1	P40893	198 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	YFR054C	P43622	192 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	BAT2	P47176	376 aa	Known RBP	4.21	□□□□□ -1.74
SWI3	YJL176C	CRT10	Q08226	957 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	SKI7	Q08491	747 aa	Predicted RBP	4.21	□□□□□ -1.74
SWI3	YJL176C	YDL109C	Q12103	647 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	SFG1	Q12507	346 aa		4.21	□□□□□ -1.74
SWI3	YJL176C	SIR3	P06701	978 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	SNC1	P31109	117 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	MRPL6	P32904	214 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	RRP4	P38792	359 aa	Known RBP	4.2	□□□□□ -1.74
SWI3	YJL176C	YHR180W	P38868	163 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	CTF8	P38877	133 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	SPO73	P40031	143 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	YIL166C	P40445	542 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	SNL1	P40548	159 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	HXT9	P40885	567 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	MNN5	P46982	586 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	YJR098C	P47139	656 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	SHE4	P51534	789 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	RPN14	P53196	417 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	HXT11	P54862	567 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	SDC1	Q03323	175 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	SNX41	Q04053	625 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	NFI1	Q12216	726 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	APC2	Q12440	853 aa		4.2	□□□□□ -1.74
SWI3	YJL176C	Q0144	Q9ZZW2	109 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 25.1 ms